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Fix preprocessing lincs (theislab#11)
* Ignore config full lincs * Add pp for full lincs dataset * Minor changes * Fix de keys derived from 'cov_drug_dose_name' * Move imports for faster db access * Change datset to "_pp" for full lincs * Minor changes * Move SMILES addition to pp folder * Replace '/' in dict keys for .h5ad compatibility * Add check for keys in `adata.uns['rank_genes_groups_cov']`
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@@ -144,3 +144,4 @@ dmypy.json | |
# VSCode | ||
settings.json | ||
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scripts/config_full_lincs.yaml |
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672 changes: 336 additions & 336 deletions
672
notebooks/lincs_SMILES.ipynb → preprocessing/lincs_SMILES.ipynb
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