Fix #16 increase number of ideograms to pring

BU-ISCIII · Mar 19, 2021 · 53ca11e · 53ca11e
1 parent ee51b26
commit 53ca11e
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Showing 4 changed files with 22 additions and 18 deletions.
diff --git a/config_files/OR.conf b/config_files/OR.conf
@@ -40,7 +40,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 2
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 20p
 
 </plot>
@@ -69,7 +69,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 3r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 
 </plot>
@@ -145,7 +145,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 
 #<rules>
@@ -229,7 +229,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 10r
 snuggle_sampling                = 10
 snuggle_tolerance               = 5r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 3p
 
 <rules>
@@ -311,7 +311,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 10
 snuggle_tolerance               = 5r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 3p
 
 <rules>
@@ -470,6 +470,7 @@ rmultiplier    = 1
 ####################
 <<include etc/housekeeping.conf>>
 max_points_per_track* = 8000000
+max_ideograms*=1000
 
 ########IMAGE
 #############

diff --git a/config_files/circos_individual_1_3_3.conf b/config_files/circos_individual_1_3_3.conf
@@ -91,7 +91,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 2
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 20p
 
 </plot>
@@ -120,7 +120,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 3r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 
 </plot>
@@ -196,7 +196,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 
 #<rules>
@@ -280,7 +280,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 10r
 snuggle_sampling                = 10
 snuggle_tolerance               = 5r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 3p
 
 <rules>
@@ -362,7 +362,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 10
 snuggle_tolerance               = 5r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 3p
 
 <rules>
@@ -521,6 +521,7 @@ rmultiplier    = 1
 ####################
 <<include etc/housekeeping.conf>>
 max_points_per_track* = 8000000
+max_ideograms*=1000
 
 ########IMAGE
 #############

diff --git a/config_files/circos_summary_1_3_3.conf b/config_files/circos_summary_1_3_3.conf
@@ -108,7 +108,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 2
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 20p
 
 </plot>
@@ -133,7 +133,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 #snuggle_refine                 = yes
 
@@ -219,7 +219,7 @@ label_snuggle = yes
 max_snuggle_distance  = 10r
 snuggle_sampling                = 10
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 500p
 #snuggle_refine                 = yes
 
@@ -315,14 +315,14 @@ show          = no
 
 <rule>
 importance = 110
-condition  = var(size1) < 2kb 
+condition  = var(size1) < 2kb
 show       = no
 flow = continue
 </rule>
 
 <rule>
 importance = 110
-condition  = var(size2) < 2kb 
+condition  = var(size2) < 2kb
 show       = no
 flow = continue
 </rule>
@@ -433,6 +433,7 @@ rmultiplier    = 1
 ####################
 <<include etc/housekeeping.conf>>
 max_points_per_track* = 8000000
+max_ideograms*=1000
 ########IMAGE
 #############
 <image>

diff --git a/config_files/simple.conf b/config_files/simple.conf
@@ -103,7 +103,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 5r
 snuggle_sampling                = 2
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 20p
 
 </plot>
@@ -131,7 +131,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 6r
 snuggle_sampling                = 10
 snuggle_tolerance               = 1r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 10p
 
 #<rules>
@@ -214,7 +214,7 @@ label_snuggle             = yes
 max_snuggle_distance  = 10r
 snuggle_sampling                = 10
 snuggle_tolerance               = 5r
-snuggle_link_overlap_test      = yes 
+snuggle_link_overlap_test      = yes
 snuggle_link_overlap_tolerance = 3p
 
 <rules>
@@ -369,6 +369,7 @@ rmultiplier    = 1
 ####################
 <<include etc/housekeeping.conf>>
 max_points_per_track* = 8000000
+max_ideograms*=1000
 
 ########IMAGE
 #############