removed compilant option for prokka

BU-ISCIII · Apr 12, 2021 · 724c526 · 724c526
1 parent f561277
commit 724c526
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/bin/prokka_annotation.sh b/bin/prokka_annotation.sh
@@ -212,7 +212,7 @@ prokka --force --outdir $output_dir \
 --usegenus \
 --centre BU-ISCIII \
 --locustag $prefix \
---compliant \
+--addgenes \
 --cpus $threads \
 $input_file #|| error ${LINENO} $(basename $0) "Prokka command failed. See $output_dir/logs for more information."