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Fix 1 locale in Singularity recipe
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saramonzon committed Mar 12, 2019
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Expand Up @@ -21,6 +21,7 @@ From: centos:latest
# Executables must be exported for nextflow, if you use their singularity native integration.
# It would be cool to use $SCIF_APPBIN_bwa variable, but it must be set after PATH variable, because I tried to use it here and in %environment without success.
echo "PlasmidID Done"
echo "export LC_ALL=en_US.UTF-8" >> $SINGULARITY_ENVIRONMENT
find /scif/apps -maxdepth 2 -name "bin" | while read in; do echo "export PATH=\${PATH}:$in" >> $SINGULARITY_ENVIRONMENT;done


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