Add container mulled-v2-0ce81b0672b34c2cb41c8710f4b31136f1a9fa46:569801f25ac4b9903cc97a107fce58a45f7b8a3a. #4317
Workflow file for this run
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name: Build image | |
on: [push, pull_request] | |
env: | |
MULLED_NAMESPACE: biocontainers | |
jobs: | |
build-and-test: | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: [3.9] | |
steps: | |
- uses: actions/checkout@v4 | |
- uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Install python dependencies | |
run: | | |
#python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@dev#subdirectory=packages/util | |
#python -m pip install git+https://[email protected]/galaxyproject/galaxy.git@dev#subdirectory=packages/tool_util | |
python -m pip install galaxy-tool-util | |
- run: docker --version | |
- run: docker info | |
- name: Build images | |
run: | | |
mulled-build-files --check-published --singularity --namespace $MULLED_NAMESPACE build-and-test ./combinations --verbose | |
- name: Upload images (if pushed to master branch) | |
if: github.ref == 'refs/heads/master' && github.repository_owner == 'BioContainers' | |
env: | |
SSH_AUTH_SOCK: /tmp/ssh_agent.sock | |
INVOLUCRO_AUTH: "https://${{ secrets.MY_USER }}:${{ secrets.MY_PASSWORD }}@quay.io/v1/?email=${{ secrets.MY_EMAIL }}" | |
run: | | |
mkdir -p ~/.ssh | |
ssh-keyscan -t rsa depot.galaxyproject.org >> ~/.ssh/known_hosts | |
ssh-agent -a $SSH_AUTH_SOCK > /dev/null | |
ssh-add - <<< "${{ secrets.ORVAL_KEY }}" | |
mulled-build-files --check-published --namespace $MULLED_NAMESPACE --oauth-token ${{ secrets.QUAY_OAUTH_TOKEN }} push ./combinations | |
ls -l singularity_import | |
[ "$(ls -A singularity_import)" ] && echo 'uploading Singularity images' && scp singularity_import/*:* [email protected]:/srv/nginx/depot.galaxyproject.org/root/singularity/ |