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@Bioinfo2015

Bioinfo2015

Datamining for Genomics, Proteomics and Systems Biology

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  1. DiffLogo DiffLogo Public

    Forked from mgledi/DiffLogo

    R

  2. qsub-omics qsub-omics Public

    Forked from AAFC-BICoE/qsub-omics

    Functions to qsub common genomics and transcriptomics tools, including genome and transcriptome assembly and annotation

    Shell

  3. MBB-Bio-Roll MBB-Bio-Roll Public

    Forked from AAFC-BICoE/MBB-Bio-Roll

    Extended bioinformatics roll for the Rocks cluster

    C++

  4. Mining-TCGA-Data Mining-TCGA-Data Public

  5. TCGA-dataset-crawler TCGA-dataset-crawler Public

    Forked from mercutio22/TCGA-dataset-crawler

    Downloads all level3 TCGA datasets for lower grade glioblastoma (will generalize in the future)

    Python 1

  6. caret caret Public

    Forked from topepo/caret

    caret (Classification And Regression Training) R package that contains misc functions for training and plotting classification and regression models

    R

Repositories

Showing 10 of 117 repositories
  • Bioinformatics_notes Public Forked from mdozmorov/Bioinformatics_notes

    Bioinformatics and genomics resources

    Bioinfo2015/Bioinformatics_notes’s past year of commit activity
    0 MIT 18 0 0 Updated Aug 31, 2021
  • awesome Public Forked from shenwei356/awesome

    Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.

    Bioinfo2015/awesome’s past year of commit activity
    0 MIT 177 0 0 Updated Aug 26, 2021
  • bioinfokit Public Forked from reneshbedre/bioinfokit

    Bioinformatics data analysis and visualization toolkit

    Bioinfo2015/bioinfokit’s past year of commit activity
    Python 0 MIT 76 0 0 Updated Aug 13, 2021
  • GenFam Public Forked from reneshbedre/GenFam

    A web application and database for gene family‐based classification and functional enrichment analysis

    Bioinfo2015/GenFam’s past year of commit activity
    Python 0 MIT 1 0 0 Updated Dec 24, 2020
  • pindel Public Forked from genome/pindel

    Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.

    Bioinfo2015/pindel’s past year of commit activity
    C++ 0 GPL-3.0 92 0 0 Updated Jun 20, 2020
  • DMRichR Public Forked from ben-laufer/DMRichR

    An executable and package for the statistical analysis and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosine reports)

    Bioinfo2015/DMRichR’s past year of commit activity
    R 0 GPL-3.0 23 0 0 Updated Apr 30, 2020
  • lambda Public Forked from seqan/lambda

    LAMBDA – the Local Aligner for Massive Biological DatA

    Bioinfo2015/lambda’s past year of commit activity
    C++ 0 20 0 0 Updated Apr 16, 2020
  • MDS-for-gene-clustering Public Forked from liltruth/MDS-for-gene-clustering
    Bioinfo2015/MDS-for-gene-clustering’s past year of commit activity
    Python 0 1 0 0 Updated Aug 26, 2018
  • bioinformatics Public Forked from ossu/bioinformatics

    🔬 Path to a free self-taught education in Bioinformatics!

    Bioinfo2015/bioinformatics’s past year of commit activity
    0 945 0 0 Updated Jul 23, 2018
  • smartas Public Forked from hclimente/smartas

    📓Notebook of Climente-González et al. (2017), The Functional Impact of Alternative Splicing in Cancer.

    Bioinfo2015/smartas’s past year of commit activity
    Jupyter Notebook 0 5 0 0 Updated Mar 5, 2018
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