barcode recover and clone relationship calculate

This is the official code for MobileSAM project that makes SAM lightweight for mobile applications and beyond!

Segment Anything for Microscopy

IPSC Prediction with Deep Learning

利用Segment Anything(SAM)模型进行快速标注

The repository provides code for running inference with the SegmentAnything Model (SAM), links for downloading the trained model checkpoints, and example notebooks that show how to use the model.

The github repository for our paper SegmentAnything helps microscopy images based automatic and quantitative organoid detection and analysis

This research enhances early disease diagnosis by analyzing retinal blood vessels in fundus images using deep learning. It employs eight pre-trained CNN models and Explainable AI techniques.

[ECCV 2022] Official repository for "MaxViT: Multi-Axis Vision Transformer". SOTA foundation models for classification, detection, segmentation, image quality, and generative modeling...

Using for the segmentation of organoids

📊 Benchmark multiple object trackers (MOT) in Python

Colab Notebooks implementing training and inference for the methods of several contestants participating in the 2021 CTC edition, in order to fulfill the reusability criteria

Pixel-realignment based self-supervised reconstruction for structured illumination microscopy

This repository contains the code, and access to the pretrained models and datasets for the paper: "Automated analysis of high-content microscopy data with deep learning"

Facile quantification of nanosized bioparticles in bright-filed micrograph via deep learning

A python library for multi omics included bulk, single cell and spatial RNA-seq analysis.

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Splicing Prediction Pipeline

A deep learning-based tool to identify splice variants

Transformer for One-Stop Interpretable Cell-type Annotation

Pipeline for processing inDrops sequencing data

The second version of the Kraken taxonomic sequence classification system

ENCODE long read RNA-seq pipeline