GitHub - CampagneLaboratory/bwa: Burrow-Wheeler Aligner

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 21 Commits
bwt_gen		bwt_gen
m4		m4
.gitignore		.gitignore
AUTHORS		AUTHORS
COPYING		COPYING
ChangeLog		ChangeLog
INSTALL		INSTALL
Makefile.am		Makefile.am
Makefile.in		Makefile.in
NEWS		NEWS
README		README
aclocal.m4		aclocal.m4
acx_pthread.m4		acx_pthread.m4
autogen.sh		autogen.sh
bamlite.c		bamlite.c
bamlite.h		bamlite.h
bntseq.c		bntseq.c
bntseq.h		bntseq.h
bwa.1		bwa.1
bwape.c		bwape.c
bwase.c		bwase.c
bwase.h		bwase.h
bwaseqio.c		bwaseqio.c
bwt.c		bwt.c
bwt.h		bwt.h
bwt_lite.c		bwt_lite.c
bwt_lite.h		bwt_lite.h
bwtaln.c		bwtaln.c
bwtaln.h		bwtaln.h
bwtgap.c		bwtgap.c
bwtgap.h		bwtgap.h
bwtindex.c		bwtindex.c
bwtio.c		bwtio.c
bwtmisc.c		bwtmisc.c
bwtsw2.h		bwtsw2.h
bwtsw2_aux.c		bwtsw2_aux.c
bwtsw2_chain.c		bwtsw2_chain.c
bwtsw2_core.c		bwtsw2_core.c
bwtsw2_main.c		bwtsw2_main.c
cleanup.sh		cleanup.sh
compile		compile
config.guess		config.guess
config.h.in		config.h.in
config.sub		config.sub
configure		configure
configure.in		configure.in
cs2nt.c		cs2nt.c
depcomp		depcomp
goby.c		goby.c
goby.h		goby.h
install-sh		install-sh
is.c		is.c
khash.h		khash.h
kseq.h		kseq.h
ksort.h		ksort.h
kstring.c		kstring.c
kstring.h		kstring.h
kvec.h		kvec.h
main.c		main.c
main.h		main.h
missing		missing
qualfa2fq.pl		qualfa2fq.pl
simple_dp.c		simple_dp.c
solid2fastq.pl		solid2fastq.pl
stamp-h1		stamp-h1
stdaln.c		stdaln.c
stdaln.h		stdaln.h
utils.c		utils.c
utils.h		utils.h

Repository files navigation

This fork of BWA supports Goby. To compile BWA with Goby support, see installation instructions at http://campagnelab.org/software/goby/bwa/

Released packages can be downloaded from SourceForge.net:

  http://sourceforge.net/projects/bio-bwa/files/

Introduction and FAQ are available at:

  http://bio-bwa.sourceforge.net

Manual page at:

  http://bio-bwa.sourceforge.net/bwa.shtml

Mailing list:

  [email protected]

To sign up:

  http://sourceforge.net/mail/?group_id=276243

Publications (Open Access):

  http://www.ncbi.nlm.nih.gov/pubmed/20080505
  http://www.ncbi.nlm.nih.gov/pubmed/19451168

Incomplete list of citations (via HubMed.org):

  http://www.hubmed.org/references.cgi?uids=20080505
  http://www.hubmed.org/references.cgi?uids=19451168