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1. Roots Roots Public

   Roots is a package designed to take experimentally determined morphometric data and return an artificial neuronal arbor which satisfies the user-defined parameters.

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2. AttractedGrowthConeSearch AttractedGrowthConeSearch Public

   This script is used to support the addition of biologically realistic jitter to curves based on histological data. The basic principle of this method is to utilized hypothetical growth cones to con…

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3. Neurospice Neurospice Public

   Neurospice v1.0 comprises a Python library to support automated construction of a mesh and field solution with user defined current sources as the input. This library could be used to support in si…

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4. SWCToolkit SWCToolkit Public

   SWCToolkit is a package designed to facilitate virtual interaction with experimentally reconstructed morphologies documented in the standard SWC file format (i.e. neuromorpho). Originally this pack…

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5. SWCVisualization SWCVisualization Public

   SWCVisualization is a package designed to facilitate virtual interaction with experimentally reconstructed morphologies documented in the standard SWC file format (i.e. neuromorpho). Originally thi…

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6. nii2surface nii2surface Public

   nii2surface takes a nifti brain image stack, identifies a particular target voxel value (perhaps a label from an atlas) and creates a surface from the labeled voxels using Poisson Surface Reconstru…

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