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Engine: Refactor use of global Bot (thrasher-corp#563)
* refactor use of global Bot * make the dependency on having an existing running Engine more obvious * use explicit dependency of engine in RPCServer * reduce static dependencies in rpcserver * improve helpers * revert bad document update, add check for nil error in test * add basic start stop test * fix race condition in storage * skip the test because of race conditions * fix typo * add empty line
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