CollinJ0
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grp2_paper Public
Code and data used in The Great Repertoire Project v2
Jupyter Notebook MIT License UpdatedApr 1, 2024 -
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Snakemake-presto Public
UMI Barcoded Illumina 2x250 BCR mRNA Preprocessing with Presto
Python UpdatedJun 24, 2022 -
velocyto.py Public
Forked from velocyto-team/velocyto.pyRNA velocity estimation in Python
Python BSD 2-Clause "Simplified" License UpdatedJun 18, 2022 -
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abstar Public
Forked from brineylab/abstarVDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
Python MIT License UpdatedMar 8, 2022 -
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single-cell-tutorial Public
Forked from theislab/single-cell-tutorialSingle cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"
Jupyter Notebook UpdatedSep 20, 2021 -
omnirat_paper Public
Code and data used in the OmniRat paper
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antibodies Public
Helpful Scripts for Antibody NGS Data Processing
Python MIT License UpdatedDec 10, 2019 -
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partis Public
Forked from psathyrella/partisB- and T-cell receptor sequence annotation, simulation, clonal family, and germline inference
Python GNU General Public License v3.0 UpdatedApr 8, 2019 -
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antibody_ngs_pipeline Public
Bulk antibody sequence preprocessing, annotation with abstar, import to MongoDB
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cellranger Public
Forked from 10XGenomics/cellranger10x Genomics Single Cell 3' Gene Expression and VDJ Assembly
Python Other UpdatedMar 17, 2018