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UCSC Genomics Institute
- Santa Cruz, CA
Stars
Automated nginx proxy for Docker containers using docker-gen
Code for the paper Hybrid Spectrogram and Waveform Source Separation
Minecraft: Bedrock Edition network protocol in Javascript
A best practices guide for Nextflow on Kubernetes
Apache Airflow - A platform to programmatically author, schedule, and monitor workflows
🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.
Command-line program to download videos from YouTube.com and other video sites
Resumes generated using the GitHub informations
A Slurm cluster using docker-compose
Python decorators for building command group CLIs
Released CWL v1.2.1 specification
Common Workflow Language reference implementation
Version control, test, and CI/CD your Python Jupyter notebooks.
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
Official home of genome aligner based upon notion of Cactus graphs
libcare -- Patch Userspace Code in Live Processes
Utilities for the Terra notebook environment.
Terra is a low-level system programming language that is embedded in and meta-programmed by the Lua programming language.
main repository: https://github.com/dcppc/centillion
Doing the OAuth dance with style using Flask, requests, and oauthlib.
A pure python implementation of Mesos scheduler and executor
A bot that will archive your slack messages and make them searchable. No more 10,000 message search limit.
UCSC Genome Browser source tree. Stable branch: "beta".
HMMER: biological sequence analysis using profile HMMs
Implementation of Positional Burrows-Wheeler Transform for genetic data