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  • UCSC Genomics Institute
  • Santa Cruz, CA

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@BD2KGenomics @ucsc-cgp @DataBiosphere @braingeneers

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Showing results

Automated nginx proxy for Docker containers using docker-gen

Python 19,070 3,045 Updated Feb 23, 2025

Code for the paper Hybrid Spectrogram and Waveform Source Separation

Python 8,660 1,125 Updated Apr 24, 2024

Minecraft: Bedrock Edition network protocol in Javascript

TypeScript 17 1 Updated Jan 7, 2023

A best practices guide for Nextflow on Kubernetes

Shell 18 Updated Nov 8, 2023

Apache Airflow - A platform to programmatically author, schedule, and monitor workflows

Python 38,965 14,739 Updated Mar 1, 2025

🤗 Transformers: State-of-the-art Machine Learning for Pytorch, TensorFlow, and JAX.

Python 140,412 28,153 Updated Mar 1, 2025

Command-line program to download videos from YouTube.com and other video sites

Python 134,440 10,221 Updated Feb 28, 2025

Resumes generated using the GitHub informations

JavaScript 62,272 1,355 Updated Feb 15, 2023

Virtual Python Environment builder

Python 4,875 1,038 Updated Feb 27, 2025

A Slurm cluster using docker-compose

Dockerfile 343 196 Updated Sep 27, 2024

Concurrent reads of HTTP URL addressed data

Python 6 1 Updated May 6, 2024

Python decorators for building command group CLIs

Python 5 Updated Jan 5, 2021

Released CWL v1.2.1 specification

Common Workflow Language 35 22 Updated Dec 5, 2024

Common Workflow Language reference implementation

Python 344 231 Updated Mar 1, 2025

Version control, test, and CI/CD your Python Jupyter notebooks.

Python 4 1 Updated Sep 27, 2021

A library and toolkit for pharmacometrics

Python 51 15 Updated Feb 28, 2025

Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.

Python 91 87 Updated Feb 20, 2025

Official home of genome aligner based upon notion of Cactus graphs

C 553 113 Updated Feb 28, 2025

libcare -- Patch Userspace Code in Live Processes

C 149 57 Updated Oct 15, 2020

Utilities for the Terra notebook environment.

Python 7 7 Updated Nov 20, 2024

Terra is a low-level system programming language that is embedded in and meta-programmed by the Lua programming language.

C++ 2,778 206 Updated Jan 6, 2025

main repository: https://github.com/dcppc/centillion

Python 3 Updated Feb 10, 2019

Doing the OAuth dance with style using Flask, requests, and oauthlib.

Python 1,008 157 Updated Jun 7, 2024

Python mesos scheduler HTTP library

Python 12 9 Updated Dec 16, 2020

A pure python implementation of Mesos scheduler and executor

Python 163 88 Updated Apr 21, 2021

A bot that will archive your slack messages and make them searchable. No more 10,000 message search limit.

Python 225 60 Updated Jul 31, 2024

UCSC Genome Browser source tree. Stable branch: "beta".

C 230 91 Updated Mar 1, 2025

HMMER: biological sequence analysis using profile HMMs

C 336 73 Updated Jan 30, 2025

Implementation of Positional Burrows-Wheeler Transform for genetic data

C 104 38 Updated Jan 28, 2025
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