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scib-reproducibility Public
Forked from theislab/scib-reproducibilityAdditional code and analysis from the single-cell integration benchmarking project
R MIT License UpdatedApr 1, 2021 -
integrating-scRNA-and-scATAC-data Public
Forked from sheetalgiri/integrating-scRNA-and-scATAC-dataJupyter Notebook UpdatedMar 8, 2021 -
anndata Public
Forked from scverse/anndataAnnotated data.
Python BSD 3-Clause "New" or "Revised" License UpdatedDec 3, 2020 -
pysam Public
Forked from pysam-developers/pysamPysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
C MIT License UpdatedJun 30, 2020 -
scATAC-benchmarking Public
Forked from pinellolab/scATAC-benchmarkingBenchmarking computational single cell ATAC-seq methods
Jupyter Notebook MIT License UpdatedDec 5, 2019 -
epiScanpy Public
Forked from colomemaria/epiScanpyEpiscanpy: Epigenomics Single Cell Analysis in Python
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bamnostic Public
Forked from betteridiot/bamnostica pure Python multi-version tolerant, runtime and OS-agnostic Binary Alignment Map (BAM) file parser and random access tool
Python BSD 3-Clause "New" or "Revised" License UpdatedAug 26, 2019 -
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bioconda-recipes Public
Forked from bioconda/bioconda-recipesConda recipes for the bioconda channel.
Shell UpdatedMay 8, 2019 -
mgcpy Public
Forked from neurodata/mgcpy-oldMultiscale Graph Correlation (and other independence and K-sample tests) in Python
Jupyter Notebook Apache License 2.0 UpdatedApr 24, 2019 -
pyABC Public
Forked from ICB-DCM/pyABCdistributed, likelihood-free inference
Python BSD 3-Clause "New" or "Revised" License UpdatedApr 20, 2019 -
scanpy Public
Forked from scverse/scanpySingle-Cell Analysis in Python. Scales to >1M cells.
Python BSD 3-Clause "New" or "Revised" License UpdatedMar 29, 2019 -
methimpute Public
Forked from ataudt/methimputeImpute DNA methylation from WGBS data.