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Merge pull request plotly#37 from plotly/dash_bio
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dash bio sample inputs
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@jackparmer
jackparmer authored Aug 29, 2021
2 parents 6d4d9e5 + 20088fe commit 771c436
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26,212 changes: 26,212 additions & 0 deletions Dash_Bio/Chromosomal/circos_graph_data.json
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37 changes: 37 additions & 0 deletions Dash_Bio/Chromosomal/clustergram_mtcars.tsv
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# Name: Motor Trend Car Road Tests
# Description: The data was extracted from the 1974 Motor Trend US magazine, and comprises fuel consumption and 10 aspects of automobile design and performance for 32 automobiles (1973--74 models). (from https://www.rdocumentation.org/packages/datasets/versions/3.5.1/topics/mtcars)
# Source: https://gist.github.com/seankross/a412dfbd88b3db70b74b

model mpg cyl disp hp drat wt qsec vs am gear carb
Mazda RX4 21 6 160 110 3.9 2.62 16.46 0 1 4 4
Mazda RX4 Wag 21 6 160 110 3.9 2.875 17.02 0 1 4 4
Datsun 710 22.8 4 108 93 3.85 2.32 18.61 1 1 4 1
Hornet 4 Drive 21.4 6 258 110 3.08 3.215 19.44 1 0 3 1
Hornet Sportabout 18.7 8 360 175 3.15 3.44 17.02 0 0 3 2
Valiant 18.1 6 225 105 2.76 3.46 20.22 1 0 3 1
Duster 360 14.3 8 360 245 3.21 3.57 15.84 0 0 3 4
Merc 240D 24.4 4 146.7 62 3.69 3.19 20 1 0 4 2
Merc 230 22.8 4 140.8 95 3.92 3.15 22.9 1 0 4 2
Merc 280 19.2 6 167.6 123 3.92 3.44 18.3 1 0 4 4
Merc 280C 17.8 6 167.6 123 3.92 3.44 18.9 1 0 4 4
Merc 450SE 16.4 8 275.8 180 3.07 4.07 17.4 0 0 3 3
Merc 450SL 17.3 8 275.8 180 3.07 3.73 17.6 0 0 3 3
Merc 450SLC 15.2 8 275.8 180 3.07 3.78 18 0 0 3 3
Cadillac Fleetwood 10.4 8 472 205 2.93 5.25 17.98 0 0 3 4
Lincoln Continental 10.4 8 460 215 3 5.424 17.82 0 0 3 4
Chrysler Imperial 14.7 8 440 230 3.23 5.345 17.42 0 0 3 4
Fiat 128 32.4 4 78.7 66 4.08 2.2 19.47 1 1 4 1
Honda Civic 30.4 4 75.7 52 4.93 1.615 18.52 1 1 4 2
Toyota Corolla 33.9 4 71.1 65 4.22 1.835 19.9 1 1 4 1
Toyota Corona 21.5 4 120.1 97 3.7 2.465 20.01 1 0 3 1
Dodge Challenger 15.5 8 318 150 2.76 3.52 16.87 0 0 3 2
AMC Javelin 15.2 8 304 150 3.15 3.435 17.3 0 0 3 2
Camaro Z28 13.3 8 350 245 3.73 3.84 15.41 0 0 3 4
Pontiac Firebird 19.2 8 400 175 3.08 3.845 17.05 0 0 3 2
Fiat X1-9 27.3 4 79 66 4.08 1.935 18.9 1 1 4 1
Porsche 914-2 26 4 120.3 91 4.43 2.14 16.7 0 1 5 2
Lotus Europa 30.4 4 95.1 113 3.77 1.513 16.9 1 1 5 2
Ford Pantera L 15.8 8 351 264 4.22 3.17 14.5 0 1 5 4
Ferrari Dino 19.7 6 145 175 3.62 2.77 15.5 0 1 5 6
Maserati Bora 15 8 301 335 3.54 3.57 14.6 0 1 5 8
Volvo 142E 21.4 4 121 109 4.11 2.78 18.6 1 1 4 2
14,413 changes: 14,413 additions & 0 deletions Dash_Bio/Chromosomal/manhattan_data.csv
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1 change: 1 addition & 0 deletions Dash_Bio/Chromosomal/mol2d_buckminsterfullerene.json
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"C"}, {"id": 41, "atom": "C"}, {"id": 42, "atom": "C"}, {"id": 43, "atom": "C"}, {"id": 44, "atom": "C"}, {"id": 45, "atom": "C"}, {"id": 46, "atom": "C"}, {"id": 47, "atom": "C"}, {"id": 48, "atom": "C"}, {"id": 49, "atom": "C"}, {"id": 50, "atom": "C"}, {"id": 51, "atom": "C"}, {"id": 52, "atom": "C"}, {"id": 53, "atom": "C"}, {"id": 54, "atom": "C"}, {"id": 55, "atom": "C"}, {"id": 56, "atom": "C"}, {"id": 57, "atom": "C"}, {"id": 58, "atom": "C"}, {"id": 59, "atom": "C"}, {"id": 60, "atom": "C"}], "links": [{"id": 1, "source": 1, "target": 11, "bond": 2, "strength": 1, "distance": 25.2}, {"id": 2, "source": 1, "target": 14, "bond": 1, "strength": 1, "distance": 13.59}, {"id": 3, "source": 1, "target": 16, "bond": 1, "strength": 1, "distance": 13.2}, {"id": 4, "source": 2, "target": 3, "bond": 1, "strength": 1, "distance": 13.13}, {"id": 5, "source": 2, "target": 14, "bond": 2, "strength": 1, "distance": 25.21}, {"id": 6, "source": 2, "target": 19, "bond": 1, "strength": 1, "distance": 13.26}, {"id": 7, "source": 3, "target": 9, "bond": 1, "strength": 1, "distance": 25.33}, {"id": 8, "source": 3, "target": 31, "bond": 2, "strength": 1, "distance": 21.28}, {"id": 9, "source": 4, "target": 25, "bond": 1, "strength": 1, "distance": 13.18}, {"id": 10, "source": 4, "target": 42, "bond": 1, "strength": 1, "distance": 13.15}, {"id": 11, "source": 4, "target": 43, "bond": 2, "strength": 1, "distance": 25.21}, {"id": 12, "source": 5, "target": 28, "bond": 1, "strength": 1, "distance": 25.2}, {"id": 13, "source": 5, "target": 31, "bond": 1, "strength": 1, "distance": 21.34}, {"id": 14, "source": 5, "target": 32, "bond": 2, "strength": 1, "distance": 25.21}, {"id": 15, "source": 6, "target": 10, "bond": 2, "strength": 1, "distance": 25.2}, {"id": 16, "source": 6, "target": 13, "bond": 1, "strength": 1, "distance": 13.56}, {"id": 17, "source": 6, "target": 18, "bond": 1, "strength": 1, "distance": 12.94}, {"id": 18, "source": 7, "target": 8, "bond": 2, "strength": 1, 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54, "source": 26, "target": 37, "bond": 1, "strength": 1, "distance": 21.78}, {"id": 55, "source": 26, "target": 58, "bond": 1, "strength": 1, "distance": 25.22}, {"id": 56, "source": 27, "target": 34, "bond": 1, "strength": 1, "distance": 13.59}, {"id": 57, "source": 27, "target": 55, "bond": 1, "strength": 1, "distance": 13.16}, {"id": 58, "source": 28, "target": 38, "bond": 1, "strength": 1, "distance": 21.61}, {"id": 59, "source": 29, "target": 30, "bond": 1, "strength": 1, "distance": 25.33}, {"id": 60, "source": 29, "target": 38, "bond": 2, "strength": 1, "distance": 21.67}, {"id": 61, "source": 29, "target": 53, "bond": 1, "strength": 1, "distance": 13.11}, {"id": 62, "source": 30, "target": 37, "bond": 2, "strength": 1, "distance": 21.5}, {"id": 63, "source": 30, "target": 42, "bond": 1, "strength": 1, "distance": 13.56}, {"id": 64, "source": 31, "target": 45, "bond": 1, "strength": 1, "distance": 21.49}, {"id": 65, "source": 32, "target": 58, "bond": 1, "strength": 1, 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"target": 57, "bond": 2, "strength": 1, "distance": 25.34}, {"id": 90, "source": 52, "target": 56, "bond": 1, "strength": 1, "distance": 25.21}]}
266 changes: 266 additions & 0 deletions Dash_Bio/Chromosomal/oncoprint_dataset3.json
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[{
"sample": "TCGA-23-1027-01",
"gene": "BRCA1",
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}, {
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}]
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