A tool for generating consensus long-read assemblies for bacterial genomes

quality filtering tool for long reads

a collection of scripts for organising bacterial genomes by species

A tool for removing redundant genomes from a set of assemblies

UPHL's Reference Free Pipeline

Kite Autocomplete Extension for JupyterLab

Viral Annotation DefineR: classification and annotation of viral sequences based on RefSeq annotation

Nextstrain build for mpox virus

Jekesa (Illuminate) is an automated bash pipeline for bacterial whole genome assembly and typing using Illumina paired-end sequencing data.

Profiling tool for Mycobacterium tuberculosis to detect ressistance and strain type from WGS data

This repository contains bioinformatics scripts and a Docker container to perform the in silico prediction of Legionella pneumophila serogroup from short read sequences using a supervised machine l…

QuAISAR pipeline for distribution