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Update README.md
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EAexist authored Jan 10, 2023
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Expand Up @@ -39,8 +39,8 @@ Milo R, Shen-Orr S, Itzkovitz S, Kashtan N, Chklovskii D, Alon U. Network motifs
- mfinder1.2/motifDictionary
- Please refer to this dictionary about various motif structures and their id

- **data/[my_dataset_name]**
- inputs should be manually placed here under dataset directory as **data/[my_dataset_name]**. There are 2 options of input file format. Please refer to **src/mfinder_python.ipynb** for details.
- **data**
- inputs should be manually placed here under dataset directory as **data/[my_dataset_name]/[my_inputs]**. There are 2 options of input file format. Please refer to **src/mfinder_python.ipynb** for details.
- **option 1. dictionary of NetworkX graph objects** : data/[my_dataset_name]/[my_dictionary_name].pkl
- **option 2. directory of .gexf files** : data/[my_dataset_name]/gexf/[my_gexf_name].gexf

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