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19 Open 448 Closed
19 Open 448 Closed
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Issues list

Denovo_wf or classify_wf for taxonomic annotation of MAGs
#615 opened Dec 12, 2024 by Christaline-George
1
Significant differences between gtdbtk de_novo_wf (GTDB-Tk v2.3.2) and gtdbtk classify_wf (GTDB-Tk v2.1.0)
#613 opened Nov 26, 2024 by 473021677
2
ERROR: An error was encountered while running hmmsearch. error Help required for a GTDB-Tk error.
#612 opened Nov 18, 2024 by J-Weijie98
1
GTDB for large number of genomes (1.3M)
#611 opened Nov 5, 2024 by intikhab
6
Add environment variable for mash database
#607 opened Oct 18, 2024 by fplazaonate
3
Skani external command error error Help required for a GTDB-Tk error.
#606 opened Oct 14, 2024 by magicprotoss
2
Troubleshooting GTDB-Tk Database Installation and Environment Configuration error Help required for a GTDB-Tk error.
#596 opened Jul 16, 2024 by soojunglee98
3 tasks
8
Bacterial GTDB-Tk classification file does not exist error when using gtdb_to_ncbi_majority_vote.py error Help required for a GTDB-Tk error.
#595 opened Jun 22, 2024 by schmittel
1
Total genome counter in log is off (warning message) error Help required for a GTDB-Tk error.
#585 opened Apr 26, 2024 by GabeAl
1
Error running Prodigal on genome error Help required for a GTDB-Tk error.
#566 opened Dec 20, 2023 by fhdbqr
2 tasks
4
Use type strains for GTDB to NCBI taxonomy translation
#552 opened Oct 16, 2023 by fplazaonate
2
Slow download speed v214
#522 opened Jun 2, 2023 by kafker
20
Use Pyrodigal as Prodigal alternative enhancement Proposed feature or change to GTDB-Tk.
#456 opened Dec 5, 2022 by lfenske-93
2
Write debug file on exception enhancement Proposed feature or change to GTDB-Tk.
#432 opened Sep 11, 2022 by aaronmussig
Subroutines for classify enhancement Proposed feature or change to GTDB-Tk.
#358 opened Nov 8, 2021 by SilasK
1
Unnecessary computation in de novo workflow enhancement Proposed feature or change to GTDB-Tk.
#243 opened Apr 20, 2020 by donovan-h-parks
Establish novelty of user genomes enhancement Proposed feature or change to GTDB-Tk.
#233 opened Mar 13, 2020 by donovan-h-parks
Add checkpointing enhancement Proposed feature or change to GTDB-Tk.
#207 opened Dec 12, 2019 by aaronmussig
Non-parametric bootstraps enhancement Proposed feature or change to GTDB-Tk.
#116 opened Apr 17, 2019 by donovan-h-parks
ProTip! Exclude everything labeled bug with -label:bug.