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41 stars written in Python
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The fundamental package for scientific computing with Python.

Python 28,462 10,270 Updated Jan 5, 2025

Statistical data visualization in Python

Python 12,724 1,944 Updated Dec 16, 2024

The standard data-centric AI package for data quality and machine learning with messy, real-world data and labels.

Python 9,858 753 Updated Dec 30, 2024

Anomaly detection related books, papers, videos, and toolboxes

Python 8,483 1,752 Updated Dec 21, 2024

Adversarial Robustness Toolbox (ART) - Python Library for Machine Learning Security - Evasion, Poisoning, Extraction, Inference - Red and Blue Teams

Python 4,973 1,174 Updated Dec 23, 2024

An interactive grid for sorting, filtering, and editing DataFrames in Jupyter notebooks

Python 3,054 424 Updated Jan 12, 2024

brat rapid annotation tool (brat) - for all your textual annotation needs

Python 1,833 507 Updated Jul 3, 2024

the first third-party instant messaging client for Google Hangouts

Python 1,714 189 Updated Jun 12, 2022

Hi, I'm a library for interacting with GItHub's REST API in a convenient and ergonomic way. I work on Python 3.6+.

Python 1,221 406 Updated Dec 23, 2024

scikit-bio: a community-driven Python library for bioinformatics, providing versatile data structures, algorithms and educational resources.

Python 900 269 Updated Dec 31, 2024

Sensitivity Analysis Library in Python. Contains Sobol, Morris, FAST, and other methods.

Python 893 240 Updated Jan 3, 2025

🔺 Ternary plotting library for python with matplotlib

Python 745 157 Updated Jun 12, 2024

Terminal-based Mail User Agent

Python 706 164 Updated Dec 25, 2024

Graph Signal Processing in Python

Python 493 94 Updated Sep 9, 2021

Python curses command line CSV and tabular data viewer

Python 462 49 Updated Dec 22, 2022

Official QIIME 1 software repository. QIIME 2 (https://qiime2.org) has succeeded QIIME 1 as of January 2018.

Python 286 265 Updated Dec 19, 2022

Regularized kernel canonical correlation analysis in Python

Python 246 73 Updated Jul 6, 2021

Build a partitioned pangenome graph from microbial genomes

Python 246 30 Updated Dec 18, 2024

Mutt and terminal url selector (similar to urlview)

Python 219 38 Updated Dec 8, 2024

scikit-learn-inspired time series

Python 198 17 Updated Mar 20, 2024

Python package for efficient mass spectrometry data processing and visualization

Python 141 21 Updated Sep 3, 2024

A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA

Python 105 16 Updated Mar 30, 2020

Python pandas-based toolkit for explorative spectroscopy, in particular UVVis spectroscopic data.

Python 94 41 Updated Feb 3, 2023

The Biological Observation Matrix (BIOM) Format Project

Python 92 95 Updated Dec 5, 2024

Woltka: a versatile meta'omic data classifier

Python 71 25 Updated Oct 8, 2024

Formulas for mixed-effects models in Python

Python 57 14 Updated Sep 22, 2024

Automatic identification of kiwi calls from audio recordings

Python 51 15 Updated Apr 23, 2015

View and stop running IPython notebook servers

Python 51 20 Updated Jan 27, 2019

Parse Illumina sample sheets with Python

Python 50 17 Updated Mar 20, 2024
Python 39 17 Updated Jun 28, 2024
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