Update CASSIA_tutorial_final.Rmd

ElliotXie · Dec 4, 2024 · f884652 · f884652
1 parent 73e5312
commit f884652
Showing 1 changed file with 11 additions and 0 deletions.
diff --git a/CASSIA_example/CASSIA_tutorial_final.Rmd b/CASSIA_example/CASSIA_tutorial_final.Rmd
@@ -321,6 +321,17 @@ runCASSIA_subclusters(marker = marker_sub,
     model = "anthropic/claude-3.5-sonnet",
     provider = "openrouter")
 
+
+
+#To better capture the mixed signal, specify the major_cluster_info as "cd8 t cell mixed with other celltypes" instead
+
+
+runCASSIA_subclusters(marker = marker_sub,
+    major_cluster_info = "cd8 t cell mixed with other celltypes",
+    output_name = "subclustering_results2",
+    model = "anthropic/claude-3.5-sonnet",
+    provider = "openrouter")
+
 ```