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Commits on Feb 25, 2023

• harmonized output names

  bwlang

  committed
  5933917

• another try on adapter test structure

  bwlang

  committed
  187869e

• removes references to unused per readgroup option

  bwlang

  committed
  bebfdf5

• corrects param name (found by linter)

  bwlang

  committed
  8d3d390

• wrapper version bumps

  bwlang

  committed
  48f5db2

• adds missing labels

  bwlang

  committed
  806e0d6

• corrects param names (found by linter)

  bwlang

  committed
  3e95fbe

• increases max optical dup distance to 2x recommended for novaseq

  bwlang

  committed
  b525cf4

Commits on Jun 27, 2022

• working ampliconclip tool (galaxyproject#4614)

  Show description for 4596e7b
  

  bwlang

  and

  bgruening

  authored
  4596e7b

Commits on Jan 15, 2022

• Tagging policy (galaxyproject#4325)

  Show description for 92e89c8
  

  bwlang

  and

  nsoranzo

  authored
  92e89c8

Commits on Sep 25, 2020

• updates test to match version change

  bwlang

  committed
  cfbfff2

• flake8 whitespace fix

  bwlang

  committed
  4f31600

• updates data manager to q7 version of index used in latest salmon tool

  bwlang

  authored
  4ec9dcb

Commits on May 21, 2020

• marius hates letters

  bwlang

  committed
  bd06a4d

• fixes for tests to pass, switch to bioperl 1.7.2

  bwlang

  committed
  56a5799

• add missing required homepage link

  bwlang

  committed
  b1f160d

• installing the bioperl-core to this tools conda env made the tool work in my hands

  Show description for b6669aa
  bwlang

  authored
  b6669aa

Commits on May 19, 2020

• corrects link to toolshed

  bwlang

  committed
  15b7f91

• adds missing type field

  Show description for 3594cc0
  bwlang

  authored
  3594cc0

Commits on Feb 19, 2020

• accept both ucsc export and true refflat format (galaxyproject#2454)

  Show description for 11b94d7
  bwlang

  authored
  11b94d7

Commits on Feb 13, 2020

• case matters...

  bwlang

  committed
  e4d74b5

Commits on Feb 12, 2020

• some people like PE output

  bwlang

  committed
  5d5e277

Commits on Feb 6, 2020

• removes discovered dataset bits (does not work in workflows), switches null -> "" to avoid tool breakage

  bwlang

  committed
  46aa82f

Commits on Jun 13, 2019

• defaults to 2 pass mode, advanced for single pass

  bwlang

  committed
  fc4c3ee

Commits on Jun 11, 2019

• wrapper version bump

  bwlang

  committed
  a40ca42

• UMI tag was blocked from being consumed by the comment

  bwlang

  committed
  618567f

Commits on May 22, 2019

• help text updates

  bwlang

  committed
  9b9d70f

Commits on May 17, 2019

• bumps wrapper version

  bwlang

  committed
  0987dc7

• adds 2-pass low memory mode to wrapper

  bwlang

  committed
  02b9c47

Commits on Apr 8, 2019

• need to use the non-hard coded reference, docs

  Show description for badfbda
  bwlang

  authored
  badfbda

Commits on Sep 25, 2018

• clearer variable name

  bwlang

  committed
  8d879e8

• adds missing gawk requirement

  bwlang

  committed
  1608f7b

• switches to unix version of output

  bwlang

  committed
  d44fe52

• more slack in sam tests... all pass locally, mac vs. linux?

  bwlang

  committed
  88f8cad

• makes random seed work, adds test

  bwlang

  committed
  1de7bca

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