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Projection biotypes
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EreboPSilva committed Nov 15, 2022
1 parent 2de4e8a commit 05a80de
Showing 1 changed file with 1 addition and 26 deletions.
27 changes: 1 addition & 26 deletions modules/Bio/EnsEMBL/Analysis/Hive/Config/SanityChecksStatic.pm
Original file line number Diff line number Diff line change
Expand Up @@ -484,37 +484,12 @@ sub _master_config {
}, # ig_tr
'projection_coding' => {
'logic_names' => {
'project_transcripts' => 30000,
'project_transcripts' => 10000,
}, # logic_names
'biotypes' => {
'projection' => 30000,
}, # biotypes
}, # projection_coding
'projection_lincrna' => {
'logic_names' => {
'project_lincrna' => 2000,
}, # logic_names
}, # projection_lincrna
'projection_pseudogene' => {
'logic_names' => {
'project_pseudogene' => 2000,
}, # logic_names
}, # projection_pseudogene
'projection_ig_tr' => {
'logic_names' => {
'project_ig_tr' => 50,
}, # logic_names
}, # projection_ig_tr
'realign' => {
'logic_names' => {
# Would actually prefer an upper limit on realign as opposed to a lower limit
'project_transcripts' => 20000,
'genblast' => 1000,
}, # logic_names
'biotypes' => {
'realign' => 20000,
}, # biotypes
}, # realign
'rnaseq_blast' => {
# This one is an issue, logic names, counts are varied and one biotype is a
# substring of the other. At the moment it's really just a check that theres'
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