Methods for processing of data acquired with a ground-based phenotyping platform (Field Explorer) to screen and detect Aschochyta Blight of chickpea
Code and data underlying thesis chapter in:
-
- Raw FieldExplorer data Available via Pawsey
- Hyperspectral data (for preprocessing methods, see https://github.com/FCTanner/ab_hsi_phenotyping)
- Lidar data
- Visual scores
| variable | class | description |
|---|---|---|
| plot_id_fe | character | Plot ID |
| wavelength_bin | double | Waveband (or center wavelengths of binned bands) |
| reflectance_smoothed | double | Raw reflectance value |
| reflectance_raw | double | Smoothed reflectance value |
| variable | class | description |
|---|---|---|
| plot_id_fe | character | Plot ID |
| biomass | double | Biomass (Sum of plant voxel volumes) |
| groundcover | double | Ratio of covered ground per scanned surface |
| variable | class | description |
|---|---|---|
| rep | double | Replicate |
| row | double | Experimental design, row |
| bay | double | Experimental design, bay |
| plot_id_fe | character | Plot ID |
| treatment | character | Treatment |
| pad | double | Percent Ascochyta blight damage |
| experiment | character | Treatment |
| id_with_controls | character | Genotype ID |
| type | character | Genotype group |
| variable | class | description |
|---|---|---|
| scoring_order | double | Order in which trays were scored |
| tray_id | character | Tray ID |
| pad | double | Percent Ascochyta blight damage |
| plots | double | Experimental design, Plot number |
| splots | double | Experimental design, sub-unit number |
| block | double | Experimental design, Block |
| treatment | character | Treatment |
| id_with_controls | character | Genotype ID |
Florian Tanner