updating path handling inverse folder (mne-tools#10896)

FarnoodF · Jul 1, 2022 · 3c23f13 · 3c23f13
1 parent 37bbe27
commit 3c23f13
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Showing 5 changed files with 19 additions and 26 deletions.
diff --git a/tutorials/inverse/10_stc_class.py b/tutorials/inverse/10_stc_class.py
@@ -55,19 +55,17 @@
 
 # %%
 
-import os
-
 from mne import read_source_estimate
 from mne.datasets import sample
 
 print(__doc__)
 
 # Paths to example data
 sample_dir_raw = sample.data_path()
-sample_dir = os.path.join(sample_dir_raw, 'MEG', 'sample')
-subjects_dir = os.path.join(sample_dir_raw, 'subjects')
+sample_dir = sample_dir_raw / 'MEG' / 'sample'
+subjects_dir = sample_dir_raw / 'subjects'
 
-fname_stc = os.path.join(sample_dir, 'sample_audvis-meg')
+fname_stc = sample_dir / 'sample_audvis-meg'
 
 # %%
 # Load and inspect example data

diff --git a/tutorials/inverse/20_dipole_fit.py b/tutorials/inverse/20_dipole_fit.py
@@ -27,13 +27,12 @@
 from nilearn.datasets import load_mni152_template
 
 data_path = mne.datasets.sample.data_path()
-subjects_dir = op.join(data_path, 'subjects')
-fname_ave = op.join(data_path, 'MEG', 'sample', 'sample_audvis-ave.fif')
-fname_cov = op.join(data_path, 'MEG', 'sample', 'sample_audvis-cov.fif')
-fname_bem = op.join(subjects_dir, 'sample', 'bem', 'sample-5120-bem-sol.fif')
-fname_trans = op.join(data_path, 'MEG', 'sample',
-                      'sample_audvis_raw-trans.fif')
-fname_surf_lh = op.join(subjects_dir, 'sample', 'surf', 'lh.white')
+subjects_dir = data_path / 'subjects'
+fname_ave = data_path / 'MEG' / 'sample' / 'sample_audvis-ave.fif'
+fname_cov = data_path / 'MEG' / 'sample' / 'sample_audvis-cov.fif'
+fname_bem = subjects_dir / 'sample' / 'bem' / 'sample-5120-bem-sol.fif'
+fname_trans = data_path / 'MEG' / 'sample' / 'sample_audvis_raw-trans.fif'
+fname_surf_lh = subjects_dir / 'sample' / 'surf' / 'lh.white'
 
 # %%
 # Let's localize the N100m (using MEG only)

diff --git a/tutorials/inverse/70_eeg_mri_coords.py b/tutorials/inverse/70_eeg_mri_coords.py
@@ -16,8 +16,6 @@
 
 # %%
 
-import os.path as op
-
 import nibabel
 from nilearn.plotting import plot_glass_brain
 import numpy as np
@@ -45,15 +43,15 @@
 # and thus are stored as part of the ``misc`` dataset).
 
 data_path = mne.datasets.sample.data_path()
-subjects_dir = op.join(data_path, 'subjects')
-fname_raw = op.join(data_path, 'MEG', 'sample', 'sample_audvis_raw.fif')
-bem_dir = op.join(subjects_dir, 'sample', 'bem')
-fname_bem = op.join(bem_dir, 'sample-5120-5120-5120-bem-sol.fif')
-fname_src = op.join(bem_dir, 'sample-oct-6-src.fif')
+subjects_dir = data_path / 'subjects'
+fname_raw = data_path / 'MEG' / 'sample' / 'sample_audvis_raw.fif'
+bem_dir = subjects_dir / 'sample' / 'bem'
+fname_bem = bem_dir / 'sample-5120-5120-5120-bem-sol.fif'
+fname_src = bem_dir / 'sample-oct-6-src.fif'
 
 misc_path = mne.datasets.misc.data_path()
-fname_T1_electrodes = op.join(misc_path, 'sample_eeg_mri', 'T1_electrodes.mgz')
-fname_mon = op.join(misc_path, 'sample_eeg_mri', 'sample_mri_montage.elc')
+fname_T1_electrodes = misc_path / 'sample_eeg_mri' / 'T1_electrodes.mgz'
+fname_mon = misc_path / 'sample_eeg_mri' / 'sample_mri_montage.elc'
 
 ##############################################################################
 # Visualizing the MRI

diff --git a/tutorials/inverse/80_brainstorm_phantom_elekta.py b/tutorials/inverse/80_brainstorm_phantom_elekta.py
@@ -19,7 +19,6 @@
 
 # %%
 
-import os.path as op
 import numpy as np
 import matplotlib.pyplot as plt
 
@@ -37,7 +36,7 @@
 # are read to construct instances of :class:`mne.io.Raw`.
 data_path = bst_phantom_elekta.data_path(verbose=True)
 
-raw_fname = op.join(data_path, 'kojak_all_200nAm_pp_no_chpi_no_ms_raw.fif')
+raw_fname = data_path / 'kojak_all_200nAm_pp_no_chpi_no_ms_raw.fif'
 raw = read_raw_fif(raw_fname)
 
 # %%

diff --git a/tutorials/inverse/85_brainstorm_phantom_ctf.py b/tutorials/inverse/85_brainstorm_phantom_ctf.py
@@ -22,7 +22,6 @@
 
 # %%
 
-import os.path as op
 import warnings
 
 import numpy as np
@@ -42,9 +41,9 @@
 # Switch to these to use the higher-SNR data:
 # raw_path = op.join(data_path, 'phantom_200uA_20150709_01.ds')
 # dip_freq = 7.
-raw_path = op.join(data_path, 'phantom_20uA_20150603_03.ds')
+raw_path = data_path / 'phantom_20uA_20150603_03.ds'
 dip_freq = 23.
-erm_path = op.join(data_path, 'emptyroom_20150709_01.ds')
+erm_path = data_path / 'emptyroom_20150709_01.ds'
 raw = read_raw_ctf(raw_path, preload=True)
 
 # %%