Fxe
Follow
-
cdm-data-loader-utils Public
Forked from kbase/cdm-data-loader-utilsRepo for CDM input data loading and wrangling
Python MIT License UpdatedMar 10, 2025 -
-
ModelSEEDpy Public
Forked from ModelSEED/ModelSEEDpyPython package for building and analyzing models using ModelSEED
Python MIT License UpdatedMar 6, 2025 -
3H11_R12_SynCom Public
Forked from baliga-lab/3H11_R12_SynComThis repository contains data and code for the manuscript "Emergence and disruption of cooperativity in a denitrifying microbial community"
-
-
reconstructor Public
Forked from opencobra/reconstructorOpen source tool for biochemical network reconstruction
Java GNU General Public License v3.0 UpdatedSep 23, 2024 -
kb_deeptransyt Public
Forked from Apolinario8/kb_deeptransytPython MIT License UpdatedSep 20, 2024 -
-
-
escher Public
Forked from zakandrewking/escherBuild, view, share, and embed pathway maps.
JavaScript Other UpdatedJan 27, 2024 -
mOTUlizer Public
Forked from moritzbuck/mOTUlizerUtility to analyse a group of closely related MAgs/Genomes/bins/SUBs of more or less dubious origin
Python GNU General Public License v3.0 UpdatedOct 16, 2023 -
-
kb_uploadmethods Public
Forked from kbaseapps/kb_uploadmethodsPython MIT License UpdatedSep 19, 2023 -
-
KB-ModelSEEDReconstruction Public
Forked from ModelSEED/KB-ModelSEEDReconstructionJupyter Notebook MIT License UpdatedSep 13, 2023 -
jupyterlab-ess-extension Public
ESS JupyterLab Extension
TypeScript MIT License UpdatedMay 17, 2023 -
-
cobrapy Public
Forked from opencobra/cobrapyCOBRApy is a package for constraint-based modeling of metabolic networks.
Jupyter Notebook GNU General Public License v2.0 UpdatedSep 23, 2022 -
-
relation_engine Public
Forked from kbase/relation_engineRepository containing the KBase Relation Engine API, specs, and other related files.
Python MIT License UpdatedApr 19, 2022 -
kb_escher Public
Escher Service for KBase
-
ModelSEEDDatabase Public
Forked from ModelSEED/ModelSEEDDatabaseThis repository contains the definitive copy of the biochemistry and metadata used to construct models using the ModelSEED/ProbAnno approach
Python Other UpdatedAug 12, 2021 -
FastANI Public
Forked from ParBLiSS/FastANIFast Whole-Genome Similarity (ANI) Estimation
C++ Apache License 2.0 UpdatedJul 27, 2021 -
html_maps Public
Forked from nitkiew2/html_mapshtml maps for argonne escher project
UpdatedJul 23, 2021 -
-
carveme Public
Forked from cdanielmachado/carvemeCarveMe: genome-scale metabolic model reconstruction
Python Other UpdatedJun 3, 2021 -
-
fba_tools Public
Forked from cshenry/fba_toolsA suite of metabolic modeling tools created using the KBase SDK
Perl MIT License UpdatedJan 5, 2021 -
-
COBRApyBasedFBA Public
Forked from kbaseapps/COBRApyBasedFBAWrapper of COBRApy FBA functions in KBase replacing some functionality in the fba_tools module
Python MIT License UpdatedAug 17, 2020