Skip to content

Commit

Permalink
besst master isn't ready for primetime, see ksahlin/BESST#70
Browse files Browse the repository at this point in the history
  • Loading branch information
rayan committed Feb 1, 2018
1 parent d792653 commit 935ae30
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion BESST
Submodule BESST updated 36 files
+1 −11 .travis.yml
+101 −107 BESST/CreateGraph.py
+15 −15 BESST/ExtendLargeScaffolds.py
+29 −29 BESST/GenerateOutput.py
+71 −71 BESST/MakeScaffolds.py
+1 −2 BESST/Parameter.py
+2 −2 BESST/bam_parser.py
+2 −2 BESST/decide_approach.py
+24 −24 BESST/diploid/get_haplotype_regions.py
+26 −27 BESST/diploid/output_contigs.py
+1 −1 BESST/diploid/smith_waterman.py
+1 −1 BESST/diploid_main.py
+1 −1 BESST/e_nr_links.py
+2 −2 BESST/errorhandle.py
+2 −2 BESST/find_bimodality.py
+6 −7 BESST/haplotypes.py
+49 −50 BESST/libmetrics.py
+10 −11 BESST/lp_solve.py
+22 −22 BESST/order_contigs.py
+12 −12 BESST/pathgaps.py
+2 −2 BESST/plots.py
+8 −8 BESST/worker.py
+4 −4 BESST/workerprocess.py
+1 −1 README.md
+1 −5 docs/INSTALL.md
+2 −2 requirements.txt
+25 −32 runBESST
+13 −13 scripts/besst/test_lp.py
+99 −99 scripts/reads_to_ctg_map.py
+8 −14 setup.py
+0 −3,672 testdata/testset1/contigs.fa
+ − testdata/testset1/mapped.bam
+ − testdata/testset1/mapped.bam.bai
+0 −2,292 testdata/testset2/contigs.fa
+ − testdata/testset2/mapped.bam
+ − testdata/testset2/mapped.bam.bai

0 comments on commit 935ae30

Please sign in to comment.