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@GET-Foundation

GET-Foundation

README.md

GET Foundation

GET Foundation is a international collaboration to build foundation models to understand gene expression.

Our first release, GET (general expression transformer) is a model that can predict gene expression using solely cell-type specific chromatin accessibility data.

Checkout our paper at https://www.nature.com/articles/s41586-024-08391-z.

In this repo:

  • get_model: the official model repo for GET with tutorials for data processing and training. Also as a modular, composable framework for constructing multimodal cross-cell-type models.
  • gcell: the analysis package behind GET's TF-TF interaction and regulatory analysis. Also a Python playground for cell-type-specific biology hopefully can be used by Agent scientist in the future.
  • getdemo: code for hugginface demo, if you are interested in the implementation.
  • atac_rna_data_processing: deprecated and refactored into gcell.

Pinned Loading

  1. get_model get_model Public

    A modular framework for multimodal cross-cell-type transcriptional regulation models

    Jupyter Notebook 16 2

  2. gcell gcell Public

    Python playground for cell-type-specific biology

    Python 3

  3. getdemo getdemo Public

    Python

Repositories

Showing 5 of 5 repositories
  • gcell Public

    Python playground for cell-type-specific biology

    GET-Foundation/gcell’s past year of commit activity
    Python 3 0 0 0 Updated Jan 10, 2025
  • get_model Public

    A modular framework for multimodal cross-cell-type transcriptional regulation models

    GET-Foundation/get_model’s past year of commit activity
    Jupyter Notebook 16 2 0 0 Updated Jan 10, 2025
  • .github Public
    GET-Foundation/.github’s past year of commit activity
    0 0 0 0 Updated Jan 9, 2025
  • getdemo Public
    GET-Foundation/getdemo’s past year of commit activity
    Python 0 0 0 0 Updated Jan 8, 2025
  • atac_rna_data_processing Public
    GET-Foundation/atac_rna_data_processing’s past year of commit activity
    Python 0 0 0 0 Updated Jan 7, 2025

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