v1.1.2.5

Making the maximal difference between braker and augustus or braker and genemark (percentage of missing BUSCOs) configurable within best_by_compleasm.py. The default is as before 5.

v1.1.2.4

What's Changed

• Bugfix for get_longest_isoforms.py

v1.1.2.3

What's Changed

• Compleasm by @KatharinaHoff in #43
• updating compleasm dependency description by @KatharinaHoff in #44
• expanding busco lineage name with _odb10 if not present, fragile, nee… by @KatharinaHoff in #47
• Fixing bug Gaius-Augustus/BRAKER#752 by @KatharinaHoff in #48

Full Changelog: v1.1.2.2...v1.1.2.3

v1.1.2.2

What's Changed

• adding that augustus.hints.aa could also be located in the workingdir… by @KatharinaHoff in #41
• merging BUSCOs on top of braker.gtf by @KatharinaHoff in #42

Full Changelog: v1.1.2.1...v1.1.2.2

v1.1.2.1

This intermediate release contains an additional python script that invokes TSEBRA on BRAKER output directories in different ways depending on compleasm output

What's Changed

• Add Bioconda and usegalaxy.eu badge by @bgruening in #37
• Compleasm by @KatharinaHoff in #40

New Contributors

• @bgruening made their first contribution in #37
• @KatharinaHoff made their first contribution in #40

Full Changelog: v1.1.2...v1.1.2.1

v1.1.2

• fixed bug in get_longest_isoform.py

v1.1.1

TSEBRA now always prints the exon feature in its output, even if it wasn't in the input file.

v1.1.0

TSEBRA release for BRAKER3:

• normalize transcript scores
  added Options:
• --filter_single_exon_genes: filters out all purely ab into predicted single exon genes
• --score_tab /path/to/output/file.tab: print transcript scores to table
• --ignore_tx_phase: ignore reading frame while detecting overlapping transcripts

v1.0.3

• added rename_gtf.py script for renaming the IDs in a GTF file.
• added detailed documentation about the configuration file

TSEBRA v1.0.2

• added second config file
• changed lineterminator
• added 'gene' features to the output file