Code used to process the data of the HBCA project

Big Data project using Hadoop (MapReduce, spark, Hive)

Benchmarking long-read RNA-seq analysis tools

Age-dependent topic modelling

R script built on Seurat objects to analyze 10X single-cell expression data

Tools for plotting methylation data in various ways

Spatial cellular architecture predicts prognosis in glioblastoma - Nature Communications

GWAS of Postmortem Brain Samples Sheds Light on the Development of Schizophrenia and Bipolar Disorder

Smart-Seq2 pre-processing pipeline

PlotAI - Your Ultimate Plotting Assistant! 📊🤖 Use ChatGPT-3.5 to create plots in Python and Matplotlib directly in your Python script or notebook.

https://www.sc-best-practices.org

Friends don't let friends make certain types of data visualization - What are they and why are they bad.

Langevin dynamics based tours of data, in Javascript with R wrapper.

exRNA Biomarker Discovery for Liquid Biopsy

📊 R Htmlwidget for billboard.js

Similarity Weighted Nonnegative Embedding (SWNE), a method for visualizing high dimensional datasets

Single-Cell Analysis of Inter-Individual Variability by Interpretable Tensor Decomposition

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.

MEXPRESS is a data visualization tool designed for the visualization of TCGA expression, DNA methylation and clinical data.

pegasus io module for reading/writing single-cell genomics data

Bring your single-cell data to life

astir | Automated cell identity from single-cell multiplexed imaging and proteomics 🖥🔬✨

Tumor Immune Single-cell Hub

BED QC tool (in the making)

Convert Jupyter Notebooks to Web Apps

This repository contains the R code used to produce my visualisations for the #TidyTuesday challenges.