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Commits on Oct 8, 2024

• Issue 150 plotCoregulationSpatial (alserglab#160)

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Commits on Sep 15, 2022

• Expansion of geseca method overview in the vignette

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Commits on Sep 12, 2022

• Replace nproc=1 with SerialParam in tests to work correctly with expect_silent expressions

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• Update the tests for geseca analysis to match the new order of arguments

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• Update maxSize default argument value in fgsea wrapper

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Commits on Aug 22, 2022

• Added tests for Gene Set Co-Regulation Analysis

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• Removed redundant statements

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Commits on Aug 16, 2022

• Fixed: specified seed gives same results

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Commits on Aug 15, 2022

• Merge branch 'master' of github.com:vdsukhov/fgsea into geseca

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Commits on Aug 13, 2022

• Made the fgsea wrapper more explicit

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Commits on Mar 21, 2022

• Sync geseca-branch with master: Merge remote-tracking branch 'origin/master' into geseca

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Commits on Nov 10, 2021

• Merge branch 'master' into geseca

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Commits on Jul 28, 2021

• Add implementation of gene set co-regulation analysis

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Commits on Jun 1, 2021

• Fix bug with large gene set size

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Commits on Nov 9, 2020

• fora works correctly when pathways do not intersect with universe

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Commits on Nov 6, 2020

• Fix fora for a single element pathways list

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Commits on Jul 22, 2020

• Fix the value of the eps parameter for the multilevelImpl

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Commits on Jul 18, 2020

• Change the estimate of the probability of the denominator in the multilevel algorithm

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Commits on Jul 9, 2020

• Fix a bug for the case when the signed ES = 0 and scoreType != std

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Commits on Feb 20, 2020

• Fix bug in collapsePathways

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Commits on Dec 24, 2019

• Change vignette and add information about deprecated absEps parameter

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• Merge branch 'master' into transition_to_multilevel

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Commits on Dec 23, 2019

• Change vignette

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• Rename absEps to eps

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Commits on Dec 19, 2019

• Add wrapper for gsea methods

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Commits on Dec 18, 2019

• Merge remote-tracking branch 'upstream/master' into transition_to_multilevel

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• Preliminary steps to set fgseaMultilevel as the default function

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Commits on Dec 13, 2019

• Add more variable names to skip warnings during the check

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• Add gseaParam to the fgseaMultilevel function

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Commits on Nov 26, 2019

• Move files for tests to another folder

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Commits on Nov 25, 2019

• Fix multilevelError calculation in fgseaMultilevel function

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Commits on Oct 21, 2019

• Change tests

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• Change emplace_back

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• Add conditional probability processing

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Commits on Oct 2, 2019

• Update files for the exact algorithm

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