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  • gpt_academic Public

    Forked from binary-husky/gpt_academic

    为GPT/GLM等LLM大语言模型提供实用化交互接口，特别优化论文阅读/润色/写作体验，模块化设计，支持自定义快捷按钮&函数插件，支持Python和C++等项目剖析&自译解功能，PDF/LaTex论文翻译&总结功能，支持并行问询多种LLM模型，支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

    Python GNU General Public License v3.0 Updated Apr 19, 2024

  • PAIRADISE Public

    Forked from Xinglab/PAIRADISE

    Paired Replicate Analysis of Allelic Differential Splicing Events

    Python Updated Feb 21, 2023

  • pysam Public

    Forked from pysam-developers/pysam

    Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

    C MIT License Updated Feb 9, 2023

  • drop Public

    Forked from gagneurlab/drop

    Pipeline to find aberrant events in RNA-Seq data, useful for diagnosis of rare disorders

    Python MIT License Updated Dec 20, 2022

  • sleuth Public

    Forked from pachterlab/sleuth

    Differential analysis of RNA-Seq

    R GNU General Public License v3.0 Updated Dec 19, 2022

  • ViennaRNA Public

    Forked from ViennaRNA/ViennaRNA

    The ViennaRNA Package

    C Other Updated Dec 13, 2022

  • ExpansionHunter Public

    Forked from Illumina/ExpansionHunter

    A tool for estimating repeat sizes

    C++ Other Updated Dec 8, 2022

  • AAV Public

    Forked from Magdoll/AAV

    Scripts for analyzing PacBio AAV sequences

    Python Updated Nov 22, 2022

  • RSEM Public

    Forked from deweylab/RSEM

    RSEM: accurate quantification of gene and isoform expression from RNA-Seq data

    C++ GNU General Public License v3.0 Updated Nov 16, 2022

  • styleguide Public

    Forked from google/styleguide

    Style guides for Google-originated open-source projects

    HTML Apache License 2.0 Updated Nov 7, 2022

  • excalibur Public

    Forked from camelot-dev/excalibur

    A web interface to extract tabular data from PDFs

    HTML MIT License Updated Nov 3, 2022

  • Sniffles Public

    Forked from fritzsedlazeck/Sniffles

    Structural variation caller using third generation sequencing

    Python MIT License Updated Oct 19, 2022

  • Bioinformatic Public

    Some small scripts，help yourself~

    Shell Updated Oct 10, 2022

  • pbsv Public

    Forked from PacificBiosciences/pbsv

    pbsv - PacBio structural variant (SV) calling and analysis tools

    Python BSD 3-Clause Clear License Updated Oct 10, 2022

  • hail Public

    Forked from hail-is/hail

    Scalable genomic data analysis.

    Python MIT License Updated Aug 18, 2022

  • ML-NLP Public

    Forked from NLP-LOVE/ML-NLP

    此项目是机器学习(Machine Learning)、深度学习(Deep Learning)、NLP面试中常考到的知识点和代码实现，也是作为一个算法工程师必会的理论基础知识。

    Jupyter Notebook Updated Jun 21, 2022

  • leafcutter Public

    Forked from davidaknowles/leafcutter

    Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard

    R Apache License 2.0 Updated May 25, 2022

  • deepvariant Public

    Forked from google/deepvariant

    DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 7, 2022

  • img Public

    Updated Feb 24, 2022

  • gnomad_mnv Public

    Forked from macarthur-lab/gnomad_mnv

    Multi-nucleotide variants (MNVs) in gnomAD 2.1

    Jupyter Notebook BSD 3-Clause "New" or "Revised" License Updated Feb 22, 2022

  • cufflinks Public

    Forked from santosjorge/cufflinks

    Productivity Tools for Plotly + Pandas

    Jupyter Notebook MIT License Updated Feb 11, 2022

  • bam-readcount Public

    Forked from genome/bam-readcount

    Count bases in BAM/CRAM files

    CMake MIT License Updated Jan 31, 2022

  • FVC Public

    Forked from yyren/FVC
    Jupyter Notebook MIT License Updated Jan 25, 2022

  • centrifuge Public

    Forked from DaehwanKimLab/centrifuge

    Classifier for metagenomic sequences

    C++ GNU General Public License v3.0 Updated Jan 14, 2022

  • SpliceAI Public

    Forked from Illumina/SpliceAI

    A deep learning-based tool to identify splice variants

    Python Other Updated Dec 2, 2021

  • NanoPlot Public

    Forked from wdecoster/NanoPlot

    Plotting scripts for long read sequencing data

    Python GNU General Public License v3.0 Updated Dec 2, 2021

  • camelot Public

    Forked from atlanhq/camelot

    Camelot: PDF Table Extraction for Humans

    Python Other Updated Nov 24, 2021

  • pnet_prostate_paper Public

    Forked from marakeby/pnet_prostate_paper

    P-NET, Biologically informed deep neural network for prostate cancer classification and discovery

    HTML GNU General Public License v2.0 Updated Nov 15, 2021

  • fastp Public

    Forked from OpenGene/fastp

    An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

    C++ MIT License Updated Oct 19, 2021

  • TrimGalore Public

    Forked from FelixKrueger/TrimGalore

    A wrapper around Cutadapt and FastQC to consistently apply adapter and quality trimming to FastQ files, with extra functionality for RRBS data

    Perl GNU General Public License v3.0 Updated Oct 12, 2021