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Commits on Apr 29, 2013

• Ensure exit status of 1 if given invalid options or index files are not found.

  Show description for 0aa7e0a
  

  Rob Davies

  committed
  0aa7e0a

Commits on Feb 23, 2013

• cleanup index loading code

  lh3

  committed
  cfa7165

Commits on Oct 26, 2012

• r132: optionally copy FASTA/Q comment to SAM

  lh3

  committed
  292f906

Commits on Jun 28, 2012

• r128: more conservative chaining filter

  lh3

  committed
  f44edd4

Commits on Apr 18, 2012

• r115: added -I and -S to bwasw

  lh3

  committed
  cd81868

Commits on Apr 2, 2012

• debugging code: bwasw has a rare bug

  lh3

  committed
  173b93d

Commits on Mar 29, 2012

• Tim's suggestion suffix file name with .64

  lh3

  committed
  bdc953c

Commits on Nov 24, 2011

• reordering BWA-SW command-line prompt

  

  Heng Li

  committed
  9f84384

• removed a useless bwa-sw CMD option

  

  Heng Li

  committed
  b17b657

Commits on Nov 5, 2011

• bwasw: read and align two fastq at a time

  

  Heng Li

  committed
  06687a3

Commits on Oct 24, 2011

• this is better; but still buggy

  

  Heng Li

  committed
  4c43c59

• not segfault immediately; but buggy

  

  Heng Li

  committed
  29c3acf

Commits on Jan 22, 2011

• Added recommendation for PacBio reads

  

  Heng Li

  committed
  7fd8948

• fixed a typo in help

  

  Heng Li

  committed
  dac5395

Commits on Jan 14, 2011

• Update to the latest modfication 0.5.9rc1-2. Update ChangeLog

  

  Heng Li

  committed
  5e30884

• Imported from my local bwa repository, the master repository.

  

  Heng Li

  committed
  007c3eb

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