add biocluster config

conf/uiuc_hpcbio.config

@@ -0,0 +1,54 @@
+/*
+ * -------------------------------------------------
+ *  HPC cluster config file - UIUC IGB Biocluster
+ * -------------------------------------------------
+ * http://biocluster.igb.illinois.edu
+ * 
+ * NOTE: this is currently set up for internal HPCBio use, note the below settings may need to be 
+ * modified if you are trying to use this for non-HPCBio use
+ * 
+ */
+
+singularity {
+    enabled = true
+    cacheDir = params.singularity_cache_dir
+    autoMounts = true
+}
+
+params {
+    config_profile_description = 'University of Illinois IGB Biocluster set up, base provided by nf-core/configs.'
+    config_profile_contact = 'Chris Fields (cjfields - at - illinois.edu)'
+    config_profile_url = 'https://http://biocluster.igb.illinois.edu/'
+    singularity_cache_dir = "/home/groups/hpcbio/singularity"
+    igenomes_base = '/home/groups/hpcbio/references'
+    max_memory = 500.GB
+    max_cpus = 24
+    max_time = 1000.h
+    hpc_queue = 'hpcbio'
+    genome = 'GRCh38'
+    // Genome reference file paths
+    genomes {
+        'NC_045512.2' {
+          fasta = "/home/groups/hpcbio/projects/CBC/2020-Dec-Test-ViralRecon/data/reference/GCF_009858895.2_ASM985889v3_genomic.fna"
+          gff   = "/home/groups/hpcbio/projects/CBC/2020-Dec-Test-ViralRecon/data/reference/GCF_009858895.2_ASM985889v3_genomic.gff"
+        }
+        'MN908947.3' {
+          fasta = "/home/groups/hpcbio/projects/CBC/2020-Dec-Test-ViralRecon/data/reference/GCA_009858895.3_ASM985889v3_genomic.fna"
+          gff   = "/home/groups/hpcbio/projects/CBC/2020-Dec-Test-ViralRecon/data/reference/GCA_009858895.3_ASM985889v3_genomic.gff"
+        }
+    }   
+}
+
+process {
+    executor = 'slurm'
+    queue = params.hpc_queue
+    // Increasing maxRetries, this will overwrite what we have in base.config
+    maxRetries = 3
+    clusterOptions = params.hpc_account
+    stageInMode = 'symlink'
+    stageOutMode = 'rsync'
+}
+
+executor {
+    queueSize = 4
+}