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Add note to the groups arg in rank_genes_groups() (scverse#2657)
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lazappi authored Sep 14, 2023
1 parent 1df92d6 commit 8438bd5
Showing 1 changed file with 3 additions and 1 deletion.
4 changes: 3 additions & 1 deletion scanpy/tools/_rank_genes_groups.py
Original file line number Diff line number Diff line change
Expand Up @@ -462,7 +462,9 @@ def rank_genes_groups(
Key from `adata.layers` whose value will be used to perform tests on.
groups
Subset of groups, e.g. [`'g1'`, `'g2'`, `'g3'`], to which comparison
shall be restricted, or `'all'` (default), for all groups.
shall be restricted, or `'all'` (default), for all groups. Note that if
`reference='rest'` all groups will still be used as the reference, not
just those specified in `groups`.
reference
If `'rest'`, compare each group to the union of the rest of the group.
If a group identifier, compare with respect to this group.
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