Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

An r package for proteomics data Analysis, developed from DEP.

An interactive web-tool for RNA-seq analysis

Absolute quantification package based on quantms.io

Processing and analysis of proteomics data

Differential Expression Analysis tool box R lang package for omics data

Gene set variation analysis

Olink R package: A collection of functions to facilitate analysis of proteomic data from Olink. The goal of this package is to help users extract biological insights from proteomic data run on the …

Methods for label-free mass spectrometry proteomics

Multi-Omics Factor Analysis

Trace information flow for inter-software comparisons in mass spectrometry-based bottom-up proteomics.

Publication-ready volcano plots with enhanced colouring and labeling

Make Interactive Complex Heatmaps

An exploration of internal reference scaling (IRS) normalization in isobaric tagging proteomics experiments.

R/shiny interface for interactive visualization of data in SummarizedExperiment objects

Area-Proportional Euler and Venn Diagrams with Ellipses

amica: an interactive and user-friendly web-based platform for the analysis of proteomics data

A tool for large scale omics datasets evaluation

A github copy of limma package from Bioconductor

A cross-platform proteomics data analysis suite

Materials collected from the First Shiny Developer Conference Palo Alto, CA January 30-31 2016

Administrative borders of Germany in GeoJSON format in different quality levels.

DEP package

The repo for LFQ-Analyst