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Commits on Nov 19, 2024

• Update fixtures.py

  zktuong

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• Create test_Sun.ipynb

  

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Commits on Nov 18, 2024

• Index syncing (zktuong#440)

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Commits on Oct 4, 2024

• prepare for python 3.12 (zktuong#363)

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Commits on Sep 23, 2024

• fix clone_key not respected properly if non-default clone_id (zktuong#429)

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Commits on Sep 10, 2024

• new saving mode (zktuong#420)

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Commits on Jul 19, 2024

• Add a return step to gently deal with preprocessing failures during the tigger step. (zktuong#403)

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Commits on Jul 4, 2024

• fix isotype parsing (zktuong#397)

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Commits on Apr 7, 2024

• add option to supply prefix or suffix with io functions (zktuong#367)

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Commits on Apr 1, 2024

• disregard non productive contigs when reporting chain/locus status (zktuong#366)

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Commits on Feb 1, 2024

• convert to use umi_count

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Commits on Jan 30, 2024

• pip prod(deps): update pandas requirement from <=2.1.4,>=1.0.3 to >=1.0.3,<=2.2.0 (zktuong#355)

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Commits on Jan 8, 2024

• Awkward to pandas (zktuong#342)

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Commits on Jan 7, 2024

• simplify build container (zktuong#346)

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Commits on Dec 21, 2023

• add new option to check contigs

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Commits on Dec 19, 2023

• fix bug with check contigs (zktuong#341)

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Commits on Dec 12, 2023

• attempting to reduce code bloat for find_clones (zktuong#329)

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Commits on Nov 24, 2023

• add logic to deal with contigs with no clone id during network generation step (zktuong#335)

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Commits on Oct 30, 2023

• update workflow dependencies (zktuong#323)

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Commits on Oct 16, 2023

• Running palantir (zktuong#321)

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Commits on Oct 5, 2023

• Speed up network generation (zktuong#319)

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Commits on Sep 1, 2023

• add options to plotting clone overlap (zktuong#307)

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Commits on Jul 19, 2023

• Update test_rpy2.py

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• ok almost there

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• let's try and unbreak this!

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• let's commit first

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• fixed up paths. need to check the typing next.

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• remove module docstring

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• ok this is what's necessary

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Commits on Jun 15, 2023

• Update docs for clone overlap (zktuong#276)

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Commits on Jan 9, 2023

• Update test_traj.py (zktuong#243)

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Commits on Jan 6, 2023

• vdj mapping causing an issue? (zktuong#241)

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Commits on Dec 13, 2022

• parse main calls (zktuong#231)

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Commits on Dec 2, 2022

• Minor behavior update (zktuong#228)

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Commits on Nov 22, 2022

• update-docstrings (zktuong#224)

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