Skip to content

Commit

Permalink
Update README.md
Browse files Browse the repository at this point in the history
  • Loading branch information
IanevskiAleksandr authored Mar 11, 2024
1 parent 286a90d commit 66ad336
Showing 1 changed file with 1 addition and 1 deletion.
2 changes: 1 addition & 1 deletion README.md
Original file line number Diff line number Diff line change
Expand Up @@ -129,7 +129,7 @@ sprintf("Seurat v%s is used", seurat_package_v);
scRNAseqData_scaled <- if (seurat_package_v5) as.matrix(pbmc[["RNA"]]$scale.data) else as.matrix(pbmc[["RNA"]]@scale.data)

# run ScType
es.max <- sctype_score(scRNAseqData = scRNAseqData_scaled, scaled = TRUE,gs = gs_list$gs_positive, gs2 = gs_list$gs_negative)
es.max <- sctype_score(scRNAseqData = scRNAseqData_scaled, scaled = TRUE, gs = gs_list$gs_positive, gs2 = gs_list$gs_negative)

# NOTE: scRNAseqData parameter should correspond to your input scRNA-seq matrix. For raw (unscaled) count matrix set scaled = FALSE
# When using Seurat, we use "RNA" slot with 'scale.data' by default. Please change "RNA" to "SCT" for sctransform-normalized data,
Expand Down

0 comments on commit 66ad336

Please sign in to comment.