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onavx

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Commits on Nov 8, 2018

• r886: fixed two minor typos

  Show description for 91f548b
  lh3

  committed
  91f548b

Commits on Nov 6, 2018

• r880: fixed false wrong FASTA/Q alert

  lh3

  committed
  3db5bfe

Commits on Nov 5, 2018

• r875: warn given incorrect FASTA/Q

  Show description for fd64dd2
  lh3

  committed
  fd64dd2

• r873: comforming to C99/C11; resolves lh3#261

  lh3

  committed
  a8ee48c

Commits on Jun 19, 2018

• r792: fixed -Wextra warnings and resolved lh3#184

  lh3

  committed
  7e6e8ca

Commits on Mar 23, 2018

• r752: option to copy comments to output (lh3#136)

  lh3

  committed
  08bd212

Commits on Feb 13, 2018

• r706: don't segfault upon wrong FASTA/Q (lh3#111)

  Show description for b328795
  lh3

  committed
  b328795

Commits on Jan 28, 2018

• r667: warn if one query file has fewer records lh3#92

  lh3

  committed
  43bfa61

Commits on Jan 19, 2018

• r659: for C++ compatibility

  lh3

  committed
  543fa12

Commits on Oct 7, 2017

• r486: treat "U" as "T" for RNA reads (lh3#33)

  lh3

  committed
  bf2d4f7

Commits on Oct 5, 2017

• r477: renamed multi_seg to frag_mode

  lh3

  committed
  9c5767f

Commits on Sep 25, 2017

• multi-seg working on toy examples

  lh3

  committed
  3bb66e1

Commits on Sep 24, 2017

• get multi-seg code ready; probably not working yet

  lh3

  committed
  a742f10

• allow to read multiple files interleaved

  lh3

  committed
  f095114

Commits on Sep 22, 2017

• get batch sequence reader ready for paired-end

  lh3

  committed
  5400191

Commits on Sep 17, 2017

• r402: exposed kseq (for API in mappy later)

  lh3

  committed
  e9c57f6

Commits on Aug 25, 2017

• r309: improved SAM header output

  lh3

  committed
  0fe1a22

Commits on Jul 19, 2017

• r188: renamed bseq* to mm_bseq*

  Show description for 71c988f
  lh3

  committed
  71c988f

Commits on Jul 1, 2017

• r131: wrong EOF test; make mb_size <= batch_size

  lh3

  committed
  a9f089f

• r129: fixed memory leak caused by qualities

  lh3

  committed
  41efd03

Commits on Jun 30, 2017

• r121: output QUAL and unmapped to SAM

  lh3

  committed
  fce87ce

Commits on Apr 7, 2017

• index can be compiled; not tested yet

  lh3

  committed
  b3bc491

Commits on Apr 6, 2017

• Homopolymer-compressed k-mer sketch

  lh3

  committed
  01baa84

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