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@JaneliaSciComp

Howard Hughes Medical Institute

GitHub organization maintained by Scientific Computing Software at HHMI's Janelia Research Campus for use by HHMI staff and external collaborators.

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  1. bigstream bigstream Public

    Tools for distributed alignment of massive images

    Jupyter Notebook 77 21

  2. NIDAQ.jl NIDAQ.jl Public

    National Instruments Data Acquisition Interface

    Julia 47 16

  3. JRCLUST JRCLUST Public

    JRCLUST

    MATLAB 34 22

  4. multifish multifish Public

    EASI-FISH analysis pipeline for spatial transcriptomics

    Jupyter Notebook 33 14

  5. xarray-multiscale xarray-multiscale Public

    scalable multiscale image pyramids in python

    Python 26 3

  6. SharkViewer SharkViewer Public

    SharkViewer is a web-based viewer for SWC neuron files. It is written entirely in JavaScript using Three.js.

    JavaScript 24 11

Repositories

Showing 10 of 266 repositories
  • VVDViewer Public

    3D/4D volumetric rendering of microscopy data

    JaneliaSciComp/VVDViewer’s past year of commit activity
    C++ 20 BSD-3-Clause 5 3 1 Updated Dec 14, 2024
  • transfero Public

    Python scripts for transferring data from rig computers

    JaneliaSciComp/transfero’s past year of commit activity
    Python 0 0 0 0 Updated Dec 14, 2024
  • EM_recon_pipeline Public

    Pipeline scripts and tools for reconstructing Electron Microscopy volumes.

    JaneliaSciComp/EM_recon_pipeline’s past year of commit activity
    Python 4 BSD-3-Clause 2 0 3 Updated Dec 13, 2024
  • dis-utilities Public

    Utilities for Data and Information Services

    JaneliaSciComp/dis-utilities’s past year of commit activity
    JavaScript 0 BSD-3-Clause 1 15 1 Updated Dec 13, 2024
  • exllsm-circuit-reconstruction Public

    Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery

    JaneliaSciComp/exllsm-circuit-reconstruction’s past year of commit activity
    Nextflow 13 BSD-3-Clause 1 2 0 Updated Dec 13, 2024
  • ossi-website Public

    Website showcasing Janelia Open Science Software Intiative (OSSI) supported software projects and other software developed at Janelia.

    JaneliaSciComp/ossi-website’s past year of commit activity
    Astro 1 BSD-3-Clause 17 16 1 Updated Dec 13, 2024
  • ShroffCelegansModels.jl Public
    JaneliaSciComp/ShroffCelegansModels.jl’s past year of commit activity
    Julia 2 MIT 0 0 35 Updated Dec 13, 2024
  • doi_common Public

    Library of common DOI-related functions for Python

    JaneliaSciComp/doi_common’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2024
  • neuronbridge-precompute Public

    Utilities for indexing and transferring of NeuronBridge-related files

    JaneliaSciComp/neuronbridge-precompute’s past year of commit activity
    Python 0 BSD-3-Clause 0 0 0 Updated Dec 13, 2024
  • n5-spark Public Forked from saalfeldlab/n5-spark

    Spark-driven processing utilities for N5 datasets.

    JaneliaSciComp/n5-spark’s past year of commit activity
    Java 0 BSD-2-Clause 7 0 0 Updated Dec 12, 2024
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