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Update README.md
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sjdlabgroup authored Sep 7, 2022
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Expand Up @@ -10,7 +10,7 @@ We used SAHMI to analyze tumor-microbiome interactions in pancreatic cancer coho
File descriptions:
- rutgers_sahmi.RDS: SAHMI metagenomic read count reports for all in-house samples analyzed by 16S-rDNA-seq, single-cell RNA-seq, bulk RNA-seq, and whole genome-seq. Raw sequencing files can be found at phs003035.v1.p1.

- pdac_sahmi.RDS: SAHMI metagenomic read count reports for single-cell sequencing data from two cohorts (scPDA1 and scPDA2).
- pdac_sahmi.RDS: SAHMI metagenomic read count reports for single-cell sequencing data from two cohorts (scPDA1: peng et al., 2019 and scPDA2: steele et al., 2020).

- peng_microbiome.RDS: processed single-barcode by taxa counts matrix for scPDA1.

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