Add alevin logs to multiqc

JokerX6696 · Jun 13, 2019 · 7dd13ea · 7dd13ea
1 parent 87a34a9
commit 7dd13ea
Showing 1 changed file with 2 additions and 1 deletion.
diff --git a/main.nf b/main.nf
@@ -344,7 +344,7 @@ process run_alevin {
 
 
   output:
-  file "${name}_alevin_results" into alevin_results
+  file "${name}_alevin_results" into alevin_results, alevin_logs
 
   script:
   read1 = reads[0]
@@ -473,6 +473,7 @@ process multiqc {
     file ('software_versions/*') from software_versions_yaml
     file workflow_summary from create_workflow_summary(summary)
     file ('STAR/*') from star_log.collect().ifEmpty([])
+    file ('alevin/*') from alevin_logs.collect().ifEmpty([])
 
     output:
     file "*multiqc_report.html" into multiqc_report