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Commits on Feb 13, 2023

• Updated black

  apeltzer

  committed
  5614f0a

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Commits on Nov 17, 2022

• added task_process name to versions & improved code organization

  kafkasl

  committed
  aae4f5e

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• Update bin/mtx_to_h5ad.py

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  kafkasl

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  grst

  authored
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Commits on Nov 15, 2022

• run black formatter & prettier

  kafkasl

  committed
  b034a2b

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• exporting versions in mtx_to_h5ad and unified cellranger w other aligners

  kafkasl

  committed
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Commits on Nov 14, 2022

• removed --export_mtx and improved kallisto gene name mapping

  kafkasl

  committed
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• Update bin/cellranger_mtx_to_h5ad.py

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  kafkasl

  and

  grst

  authored
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Commits on Nov 11, 2022

• black formatter

  kafkasl

  committed
  af55ad8

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• added export_mtx paramter

  kafkasl

  committed
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• Merge branch 'dev' into output-10x-counts

  kafkasl

  committed
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Commits on Nov 10, 2022

• finished star and cellranger

  kafkasl

  committed
  1415f2e

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Commits on Nov 9, 2022

• added cellranger exports to 10x counts

  kafkasl

  committed
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Commits on Nov 7, 2022

• adding gene names to features.tsv for kallisto aligner

  kafkasl

  committed
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Commits on Oct 24, 2022

• Fixing small bug in check_samplesheet

  heylf

  committed
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Commits on Oct 20, 2022

• initial trial with kallisto exporten t2g

  kafkasl

  committed
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Commits on Oct 11, 2022

• Allows for sequencing center to be set in samplesheet for STARsolo BAM file read group info

  

  Alison Meynert

  committed
  407cbb8

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• PythonBlack fix

  

  Alison Meynert

  committed
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• Prettier & PythonBlack checks

  

  Alison Meynert

  committed
  eafe467

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• Validation of optional samplesheet columns expected_cells and seq_center

  

  Alison Meynert

  committed
  2078e02

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Commits on Oct 6, 2022

• Move seurat to R script

  apeltzer

  committed
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Commits on Oct 5, 2022

• Merge branch 'dev' into minor-tidy

  apeltzer

  committed
  2331143

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• Fix black

  apeltzer

  committed
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• Merge branch 'alevin-fry' of https://github.com/nf-core/scrnaseq into alevin-fry

  apeltzer

  committed
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• Merge branch 'dev' of https://github.com/nf-core/scrnaseq into alevin-fry

  apeltzer

  committed
  d5a827d

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• Fixed black linting

  apeltzer

  committed
  e7b79e2

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• Merge branch 'alevin-fry' into nf-core-template-merge-2.6

  apeltzer

  committed
  e1a8782

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• Fix black linting

  apeltzer

  committed
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Commits on Oct 3, 2022

• How the hell do you run BLACK??!!

  drpatelh

  authored
  8bc49f5

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• Update check_samplesheet.py

  drpatelh

  authored
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Commits on Oct 2, 2022

• Include attribution for gtf_for_genes script

  robsyme

  committed
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Commits on Sep 30, 2022

• Python black linting suggestions

  robsyme

  committed
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Commits on Sep 22, 2022

• Linting fix

  

  EC2 Default User

  authored and

  robsyme

  committed
  ba45b13

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• Merge pull request nf-core#145 from vjmarteau/Add_print_error_fun

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  apeltzer

  authored
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• Add print_error function

  vjmarteau

  committed
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Commits on Sep 13, 2022

• Add GTF_GENE_FILTER to remove extraneous features

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  robsyme

  committed
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