Several trivial Debian patches

[Andreas Tille]
Check exact number of arguments of bwtupdate
Fix spelling

[Fabian Klötzl]
change printing as size_t is unsigned

bwtindex.c

@@ -175,7 +175,7 @@ void bwt_bwtupdate_core(bwt_t *bwt)
 int bwa_bwtupdate(int argc, char *argv[]) // the "bwtupdate" command
 {
 	bwt_t *bwt;
-	if (argc < 2) {
+	if (argc != 2) {
 		fprintf(stderr, "Usage: bwa bwtupdate <the.bwt>\n");
 		return 1;
 	}

fastmap.c

@@ -258,7 +258,7 @@ int main_mem(int argc, char *argv[])
 		fprintf(stderr, "       -E INT[,INT]  gap extension penalty; a gap of size k cost '{-O} + {-E}*k' [%d,%d]\n", opt->e_del, opt->e_ins);
 		fprintf(stderr, "       -L INT[,INT]  penalty for 5'- and 3'-end clipping [%d,%d]\n", opt->pen_clip5, opt->pen_clip3);
 		fprintf(stderr, "       -U INT        penalty for an unpaired read pair [%d]\n\n", opt->pen_unpaired);
-		fprintf(stderr, "       -x STR        read type. Setting -x changes multiple parameters unless overriden [null]\n");
+		fprintf(stderr, "       -x STR        read type. Setting -x changes multiple parameters unless overridden [null]\n");
 		fprintf(stderr, "                     pacbio: -k17 -W40 -r10 -A1 -B1 -O1 -E1 -L0  (PacBio reads to ref)\n");
 		fprintf(stderr, "                     ont2d: -k14 -W20 -r10 -A1 -B1 -O1 -E1 -L0  (Oxford Nanopore 2D-reads to ref)\n");
 		fprintf(stderr, "                     intractg: -B9 -O16 -L5  (intra-species contigs to ref)\n");

malloc_wrap.c

@@ -13,7 +13,7 @@ void *wrap_calloc(size_t nmemb, size_t size,
 	void *p = calloc(nmemb, size);
 	if (NULL == p) {
 		fprintf(stderr,
-				"[%s] Failed to allocate %zd bytes at %s line %u: %s\n",
+				"[%s] Failed to allocate %zu bytes at %s line %u: %s\n",
 				func, nmemb * size, file, line, strerror(errno));
 		exit(EXIT_FAILURE);
 	}
@@ -25,7 +25,7 @@ void *wrap_malloc(size_t size,
 	void *p = malloc(size);
 	if (NULL == p) {
 		fprintf(stderr,
-				"[%s] Failed to allocate %zd bytes at %s line %u: %s\n",
+				"[%s] Failed to allocate %zu bytes at %s line %u: %s\n",
 				func, size, file, line, strerror(errno));
 		exit(EXIT_FAILURE);
 	}
@@ -37,7 +37,7 @@ void *wrap_realloc(void *ptr, size_t size,
 	void *p = realloc(ptr, size);
 	if (NULL == p) {
 		fprintf(stderr,
-				"[%s] Failed to allocate %zd bytes at %s line %u: %s\n",
+				"[%s] Failed to allocate %zu bytes at %s line %u: %s\n",
 				func, size, file, line, strerror(errno));
 		exit(EXIT_FAILURE);
 	}
@@ -49,7 +49,7 @@ char *wrap_strdup(const char *s,
 	char *p = strdup(s);
 	if (NULL == p) {
 		fprintf(stderr,
-				"[%s] Failed to allocate %zd bytes at %s line %u: %s\n",
+				"[%s] Failed to allocate %zu bytes at %s line %u: %s\n",
 				func, strlen(s), file, line, strerror(errno));
 		exit(EXIT_FAILURE);
 	}