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Commits on Apr 28, 2014

• r731: separate layouter

  lh3

  committed
  44754cd

Commits on Apr 14, 2014

• r716: changed -x pbread

  lh3

  committed
  6d4a6de

• code backup

  lh3

  committed
  1209f16

Commits on Apr 9, 2014

• an attempt to layout tool

  lh3

  committed
  8220008

Commits on Apr 8, 2014

• dev-465: a new output format for read overlap

  Show description for f12dfae
  lh3

  committed
  f12dfae

Commits on Mar 16, 2014

• Fixed clang compiling warnings

  lh3

  committed
  8ede4ff

Commits on Nov 2, 2013

• use kthread for multi-threading

  Show description for 19d33fa
  lh3

  committed
  19d33fa

Commits on May 22, 2013

• conform to the latest (unpublished) SAM spec

  Show description for 9735d7a
  lh3

  committed
  9735d7a

• r391: better method to resolve xref alignment

  Show description for 9a6abe5
  lh3

  committed
  9a6abe5

Commits on May 3, 2013

• Removed more dependencies on utils.h

  Show description for 5c43a1f
  

  Rob Davies

  committed
  5c43a1f

Commits on May 2, 2013

• Reduce dependency on utils.h - new malloc wrapping scheme.

  Show description for 96e445d
  

  Rob Davies

  committed
  96e445d

Commits on Apr 23, 2013

• Merge branch 'master' into master_fixes. Merged up to release bwa-0.7.4-r385.

  

  Rob Davies

  committed
  b3d0a13

• r384: don't compile bwamem-lite by default

  lh3

  committed
  2f6897c

Commits on Mar 11, 2013

• Merge branch 'master' into master_fixes

  Show description for 9228e48
  

  Rob Davies

  committed
  9228e48

Commits on Mar 8, 2013

• r342: bugfix in bwasw - AS is off by one

  Show description for 017be45
  lh3

  committed
  017be45

• Merge branch 'master' into master_fixes

  Show description for aabd990
  

  Rob Davies

  committed
  aabd990

Commits on Mar 7, 2013

• r334: added pemerge to bwa

  lh3

  committed
  042e1f4

Commits on Mar 5, 2013

• Fixing problem with linking to libm on some Ubuntu systems (I see this on machine running 11.04, kernel 3.0.0-14-virtual). Changing order of -lm on the command line seems to do the trick and should…

  Show description for 25366c7
  sorensjm

  committed
  25366c7

• r329: ditch stdaln.{c,h}; no changes to bwa-mem

  Show description for 98f8966
  lh3

  committed
  98f8966

• Merge branch 'master' into master_fixes

  Show description for 8a078cc
  

  Rob Davies

  committed
  8a078cc

Commits on Mar 1, 2013

• r315: move kopen.o out of libbwa.a

  lh3

  committed
  35fb7f9

• Merge branch 'master' into master_fixes

  Show description for 6beab5f
  

  Rob Davies

  committed
  6beab5f

• Merge branch 'master' into master_fixes

  Show description for 3d33ab0
  

  Rob Davies

  committed
  3d33ab0

Commits on Feb 28, 2013

• r308: added a new API to convert region to CIGAR

  Show description for df7c3f0
  lh3

  committed
  df7c3f0

• more documentation in ksw.h

  lh3

  committed
  64d92d2

Commits on Feb 25, 2013

• change CC back to gcc

  lh3

  committed
  570e082

Commits on Feb 23, 2013

• added kopen support

  lh3

  committed
  6e7903e

• moved some common code to bwa.{c,h}

  lh3

  committed
  e613195

Commits on Feb 22, 2013

• merged bwtmisc.c to bwtindex.c

  Show description for 6230f86
  lh3

  committed
  6230f86

• minor code clean up

  Show description for f122fad
  lh3

  committed
  f122fad

Commits on Feb 14, 2013

• better and proper way to infer orinentation

  lh3

  committed
  df1ff2b

Commits on Feb 12, 2013

• code backup

  lh3

  committed
  2fc469d

• merge bseq.{h,c} to utils.{h,c}

  Show description for 95d1844
  lh3

  committed
  95d1844

• removed color-space support

  Show description for 6ad5a3c
  lh3

  committed
  6ad5a3c

• Multiple changes:

  Show description for e5ab59d
  lh3

  committed
  e5ab59d

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