Large genome reassembly based on Hi-C data (continuation and partial rewrite of GRAAL)
This is largely a work in progress and more is to be added - see GRAAL for more information on how to deploy it.
Until more detailed documentation is added, run the following to see options:
python main_single_proc.py -h
Unlike GRAAL, this is meant to be run from the command line.
Lingering artifacts found in output genomes can be corrected by editing the info_frags.txt file, either by hand or with a script. Look at options by running the following:
python parse_info_frags.py -h