Circular visualization in Python (Circos Plot, Chord Diagram, Radar Chart)

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

Bootstrap methods for various network estimation routines

My contributions to the #SWDchallenge

A repository containing contributions to the TidyTuesday project

LocusCompareR is a R package with visualization tools for comparing two genetic association datasets.

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

Code and simulated dataset

This repository contains the code (but not the data) to reproduce the manuscript : "Drug target Mendelian randomization supports apolipoprotein C3-lowering for lipoprotein-lipid levels reductions a…

Repurposing antihypertensive drugs for the prevention of Alzheimer’s disease: a Mendelian Randomization study

Mendelian Randomization with Biomarker Associations for Causality with Outcomes

Scripts for a one-sample MR of BMI on metabolite abundance in Netherlands Epidemiology of Obesity study

A small R package to make blobbograms for NMR biomarker associations

Draw forestplot in R

A Python package to make publication-ready but customizable coefficient plots.

Photo to sketch effects in R

Script to calculate polygenic risk scores in a genotyped sample using GWAS summary statistics from a disease/trait.

Cross-population polygenic prediction

Repo

RHAPSODY

R code for calculating Adjusted Rand Index and Intersection over Union of cluster results against a ground truth scenario.