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Add batch_key to release notes
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gokceneraslan committed Apr 30, 2019
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Expand Up @@ -13,11 +13,12 @@ On master :small:`April 27, 2019`
Updates:

- :func:`~scanpy.pp.neighbors` and :func:`~scanpy.tl.umap` got rid of UMAP legacy code and introduced UMAP as a dependency, see :pr:`576` :smaller:`thanks to S Rybakov`
- :func:`~scanpy.pp.combat` ComBat function now supports additional covariates which may include adjustment variables or biological condition, see :pr:`618` :smaller:`thanks to G Eraslan`
- :func:`~scanpy.pp.highly_variable_gene` now has a `batch_key` option which performs the HVG selection in each batch separately in order to reduce the batch effects by avoiding the selection of batch-specific genes. see :pr:`622` :smaller:`thanks to G Eraslan`

Bug fixes:

- :func:`~scanpy.tl.rank_genes_groups` t-test implementation doesn't return NaN when variance is 0, also changed to scipy's implementation, see :pr:`621` :smaller:`thanks to I Virshup`
- :func:`~scanpy.pp.combat` ComBat function now supports additional covariates which may include adjustment variables or biological condition, see :pr:`618` :smaller:`thanks to G Eraslan`

Version 1.4.1 :small:`April 27, 2019`
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