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Commits on Jan 26, 2024

• Lk pd 2464 batch methylome (broadinstitute#1181)

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  ekiernan

  authored
  4602a88

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Commits on Dec 18, 2023

• Np update wdlized snm3c (broadinstitute#1148)

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  nikellepetrillo

  authored
  942cb4d

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Commits on Nov 16, 2023

• Np summary snm3c (broadinstitute#1126)

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  nikellepetrillo

  authored
  4591917

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Commits on Nov 15, 2023

• Np add chomatin contacts (broadinstitute#1124)

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  nikellepetrillo

  authored
  dc0d3c4

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Commits on Nov 1, 2023

• Add unique_reads_cgn_extraction task (broadinstitute#1107)

  aawdeh

  authored
  1be3ccd

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Commits on Oct 27, 2023

• Update CondensedSnm3C.wdl

  ekiernan

  committed
  e7a6e56

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• Add unique_reads_allc

  ekiernan

  committed
  1d35189

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Commits on Oct 26, 2023

• add task dedup_unique_bam_and_index_unique_bam (broadinstitute#1103)

  aawdeh

  authored
  f834832

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Commits on Oct 25, 2023

• Cleaning up a few ls and pwds, adding echos

  ekiernan

  committed
  669225a

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• Added merge_original_and_split_bam_sort_all_reads_name_and_position

  ekiernan

  committed
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Commits on Oct 24, 2023

• PD-2379-add_remove_overlap_read_parts_task (broadinstitute#1094)

  aawdeh

  authored
  055a9ba

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Commits on Oct 11, 2023

• Np add single end r1 r2 mapping dna mode and merge sort split reads by name (broadinstitute#1092)

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  nikellepetrillo

  and

  aawdeh

  authored
  53ba51f

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Commits on Sep 27, 2023

• add splut unmapped reads (broadinstitute#1087)

  nikellepetrillo

  authored
  e347993

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Commits on Sep 26, 2023

• Np pd 2327 separate unmapped reads (broadinstitute#1084)

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  nikellepetrillo

  authored
  2ffab5e

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Commits on Sep 7, 2023

• Np pd 2326 add mapping to snm3c (broadinstitute#1075)

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  nikellepetrillo

  authored
  5d06cd6

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Commits on Aug 21, 2023

• Np sort and trim task snm3c (broadinstitute#1067)

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  nikellepetrillo

  authored
  510a977

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Commits on Aug 14, 2023

• Delete beta-pipelines/skylab/ATAC directory (broadinstitute#1061)

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  jpramosbarroso

  and

  ekiernan

  authored
  0210df6

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Commits on Aug 7, 2023

• Np update snaptoolsbwa dockers (broadinstitute#1056)

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  nikellepetrillo

  authored
  6ea70a7

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Commits on Aug 3, 2023

• Lk methylome release (broadinstitute#1055)

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  ekiernan

  authored
  1a8bb66

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Commits on Jul 18, 2023

• remove m3c docker from warp -- moved to warp-tools (broadinstitute#1045)

  aawdeh

  authored
  a97e8c6

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Commits on Jul 13, 2023

• Updated threshold back to 10000000 in snm3c.wdl (broadinstitute#1043)

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  aawdeh

  and

  kevinpalis

  authored
  910d61a

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• Update docker path in snM3C.wdl (broadinstitute#1034)

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  aawdeh

  authored
  bfad9d6

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Commits on Jun 28, 2023

• Np add filtering to methylome (broadinstitute#995)

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  nikellepetrillo

  authored
  d5b689a

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Commits on May 31, 2023

• Np create test for multiome (broadinstitute#964)

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  nikellepetrillo

  and

  ekiernan

  authored
  43792a1

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Commits on May 25, 2023

• Lk methylome (broadinstitute#940)

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  ekiernan

  and

  nikellepetrillo

  authored
  4dd46b7

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Commits on May 11, 2023

• update names of fastq files for atac and gex

  aawdeh

  authored
  bcde72a

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• updated atac inputs/outputs to be consistent with atac.wdl

  aawdeh

  committed
  7bcc89d

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• removed comment on importing fastqprocessing.wdl

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  aawdeh

  authored
  25c2312

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• removed comment on concatenating files

  aawdeh

  authored
  3cecc41

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• update MergeSortBam path in import

  aawdeh

  authored
  a293cd7

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• added word import

  aawdeh

  authored
  dcfebb3

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• removed raw import

  ekiernan

  authored
  7a5c83c

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Commits on May 10, 2023

• updated mergebam function call name

  aawdeh

  authored
  942e5fa

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• changed mergebam path

  aawdeh

  authored
  85ae10c

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• Fixed call to MergeSortBamFiles

  aawdeh

  authored
  592aa65

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