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Commits on Jan 18, 2024

• Lk pd 2452 add read length check (broadinstitute#1171)

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  ekiernan

  authored
  3e86adb

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Commits on Jan 16, 2024

• Np multimapper param starsolo (broadinstitute#1172)

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  nikellepetrillo

  and

  kayleemathews

  authored
  f3e8d6e

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Commits on Jan 12, 2024

• PD-2422 BICAN_Optimus_2nymxis_Oct_2023 (broadinstitute#1152)

  aawdeh

  authored
  1279a69

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Commits on Jan 9, 2024

• Np update multiome sci test (broadinstitute#1167)

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  nikellepetrillo

  authored
  59ae4d4

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Commits on Jan 8, 2024

• Np jprb pd 2353 multiple star rsolo align (broadinstitute#1164)

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  3 peopleauthored
  15a924f

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Commits on Jan 5, 2024

• Merge branch 'develop' into jw_fix_jg_plumbing_test

  jessicaway

  authored
  b2b48c7

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Commits on Jan 4, 2024

• Lk pd2453 add bb tag (broadinstitute#1161)

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  ekiernan

  authored
  47e49b3

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Commits on Jan 3, 2024

• Merge branch 'develop' into jw_fix_jg_plumbing_test

  jessicaway

  committed
  dbc83cf

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Commits on Dec 20, 2023

• PD-2435 Test bwa-mem2 step and run Intel distributed BWA-MEM2 (broadinstitute#1147)

  aawdeh

  authored
  83f5ece

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• Lk pd2448 upstools (broadinstitute#1150)

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  ekiernan

  authored
  7662600

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• Np dynamically size join barcodes (broadinstitute#1159)

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  nikellepetrillo

  authored
  79fe930

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Commits on Dec 13, 2023

• Update Multiome.changelog.md for Cell Bender (broadinstitute#1149)

  aawdeh

  authored
  1cb73a4

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• Making memory an optional parameter for ValidateVcf task (broadinstitute#1144)

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  3 peopleauthored
  514bb03

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Commits on Dec 10, 2023

• Downgraded cellbender to v0.3.0

  aawdeh

  committed
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Commits on Dec 6, 2023

• Added bwa-mem2 to BuildIndices (broadinstitute#1143)

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  ekiernan

  authored
  3ecd64c

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• adding gex barcodes to the multiome fragment file (broadinstitute#1133)

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  ekiernan

  authored
  409c8be

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Commits on Dec 4, 2023

• Fixes ValidateVcfs to handle when VCF is not colocated with index (broadinstitute#1137)

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  meganshand

  and

  jessicaway

  authored
  1fb087d

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Commits on Nov 30, 2023

• Np revert both vbid dockers (broadinstitute#1136)

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  nikellepetrillo

  and

  ekiernan

  authored
  41bb4b3

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Commits on Nov 28, 2023

• Fixed bug in ReblockGVCF when the index file is not located next to the GVCF (broadinstitute#1132)

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  meganshand

  and

  nikellepetrillo

  authored
  093ce41

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• PD2396 Update docker for fastqprocess to incorporate new changes. (broadinstitute#1128)

  aawdeh

  authored
  eee4ea0

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Commits on Nov 21, 2023

• Np add cell bender to multiome as optional task (broadinstitute#1125)

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  3 peopleauthored
  f660755

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Commits on Nov 20, 2023

• updated Metrics dockers to latest warp-tools (broadinstitute#1130)

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  ekiernan

  authored
  4169831

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Commits on Nov 17, 2023

• Fixed chrom sizes (broadinstitute#1129)

  ekiernan

  authored
  2d6e697

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• Update docker image to 2.0.0 (broadinstitute#1120)

  aawdeh

  authored
  43e4a08

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Commits on Nov 8, 2023

• PD2372-TagSort (broadinstitute#1106)

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  ekiernan

  authored
  c25ce33

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Commits on Oct 31, 2023

• Update inputs to CramToUnmappedBam test (broadinstitute#1104)

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  jessicaway

  authored
  412e631

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Commits on Oct 25, 2023

• update jg sample map

  jessicaway

  committed
  5c57a21

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• update paths to input files

  jessicaway

  committed
  5702559

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Commits on Oct 20, 2023

• Remove the dropna and MATCH columns from JoinBarcodes (broadinstitute#1098)

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  ekiernan

  authored
  ad7adfb

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Commits on Oct 13, 2023

• Lk pd 2374 update whitelist (broadinstitute#1093)

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  ekiernan

  authored
  848b3a7

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Commits on Oct 11, 2023

• Update UnmappedBamToAlignedBam.wdl (broadinstitute#1070)

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  ekiernan

  authored
  5889c28

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Commits on Oct 10, 2023

• Lk pd 2363 join barcodes (broadinstitute#1089)

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  ekiernan

  authored
  ee45f2f

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Commits on Sep 23, 2023

• Lk dynamically select barcode orientation (broadinstitute#1086)

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  ekiernan

  authored
  b7461f1

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Commits on Sep 19, 2023

• ReblockGVCFs now takes GVCFs that are not in the same location as their index (broadinstitute#1081)

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  meganshand

  authored
  5d992a2

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Commits on Sep 5, 2023

• Optimized MakeFragmentFile (broadinstitute#1073)

  ekiernan

  authored
  657bc6c

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