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Achievement: Arctic Code Vault ContributorAchievement: Pull Sharkx3Achievement: Starstruck

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  • shelllnk Public

    A Python package to read Microsoft Shell Link (.lnk) files.

    Python MIT License Updated Oct 12, 2024

  • python-javabridge Public

    Python wrapper for the Java Native Interface

    Python 115 63 Other Updated Jul 4, 2024

  • chunglab-neuroglancer-tools Public

    Some tools for adding URLs to Leviathan and displaying them

    Updated Oct 13, 2021

  • example-notebooks Public

    Forked from dandi/example-notebooks
    Jupyter Notebook Apache License 2.0 Updated Oct 7, 2021

  • numcodecs Public

    Forked from zarr-developers/numcodecs

    A Python package providing buffer compression and transformation codecs for use in data storage and communication applications.

    Python MIT License Updated Jun 21, 2021

  • path2json Public

    Convert whatever is at the end of a path to JSON

    Python MIT License Updated Oct 2, 2019

  • ping-party Public

    Send and receive UDP packets to and from hosts on a subnet.

    Python MIT License Updated Sep 30, 2019

  • ceph-container Public

    Forked from ceph/ceph-container

    Docker files and images to run Ceph in containers

    Shell Apache License 2.0 Updated Apr 4, 2019

  • staged-recipes Public

    Forked from conda-forge/staged-recipes

    A place to submit conda recipes before they become fully fledged conda-forge feedstocks

    Python BSD 3-Clause "New" or "Revised" License Updated Feb 22, 2019

  • linux-healthcheck Public

    My personal daily health checkup on my linux box

    Python MIT License Updated Jan 22, 2019

  • neuroglancer Public

    Forked from google/neuroglancer

    WebGL-based viewer for volumetric data

    TypeScript Apache License 2.0 Updated Dec 11, 2018

  • microscoper Public

    Forked from pskeshu/microscoper

    A simple wrapper for python-bioformats to convert .vsi CellSense format to TIFF.

    Python MIT License Updated Sep 19, 2018

  • leek-test-lfs Public

    see if I can store a binary using git-lfs

    Updated Sep 6, 2018

  • nuggt Public

    Forked from chunglabmit/nuggt

    NeUroGlancer Ground Truth - annotate cell centers

    Python MIT License Updated Aug 24, 2018

  • zwatershed Public

    Forked from donglaiw/zwatershed

    Cython functions for fast watersheds and segmentation metrics

    C++ Updated Mar 6, 2018

  • IDM Public

    Forked from donglaiw/EM-preprocess

    cython version of IDM

    C Updated Feb 12, 2018

  • Neuroproof_minimal Public

    Forked from paragt/Neuroproof_minimal
    C++ Updated Dec 5, 2017

  • keras Public

    Forked from donglaiw/keras

    Deep Learning library for Python. Runs on TensorFlow, Theano, or CNTK.

    Python Other Updated Oct 4, 2017

  • ingest-client Public

    Forked from jhuapl-boss/ingest-client

    A Python command line application for performing distributed ingest of image data into the Boss

    Python Apache License 2.0 Updated May 13, 2017

  • NeuroProof Public

    Forked from janelia-flyem/NeuroProof

    Tool for graph-based image segmentation and analysis

    C++ Other Updated Dec 7, 2016

  • bioformats Public

    Forked from ome/bioformats

    Bio-Formats is a Java library for reading and writing data in life sciences image file formats. It is developed by the Open Microscopy Environment (particularly UW-Madison LOCI and Glencoe Software…

    Java GNU General Public License v2.0 Updated Apr 1, 2016

  • centrosome Public

    Forked from CellProfiler/centrosome

    An open source image processing library

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 25, 2016

  • oauthenticator Public

    Forked from jupyterhub/oauthenticator

    GitHub OAuth + JupyterHub Authenticator = OAuthenticator

    Python BSD 3-Clause "New" or "Revised" License Updated Mar 15, 2016

  • ilastik-0.5 Public

    Forked from ilastik/ilastik-0.5

    Interactive Learning and Segmentation Toolkit

    Python Other Updated Mar 10, 2016

  • PyMaxflow Public

    Forked from pmneila/PyMaxflow

    Python library for creating flow networks and computing the maxflow/mincut (aka graph-cuts for Python)

    C++ Updated Feb 19, 2016

  • build-ilastik-on-windows Public

    Build Ilastik and its dependencies on Windows using setuptools

    Python BSD 2-Clause "Simplified" License Updated Dec 21, 2015

  • CellProfiler Public

    Forked from CellProfiler/CellProfiler

    CellProfiler mirror of the SVN repository. Note that currently, this repository is updated manually from a git-svn clone of the official SVN repository (see Cloning_in_git.txt).

    Python 1 Other Updated Nov 30, 2015

  • pytest Public

    Forked from pytest-dev/pytest

    The pytest testing tool makes it easy to write small tests, yet scales to support complex functional testing

    Python MIT License Updated Nov 4, 2015

  • tileimg Public

    Java program to create tiles out of large TIF planes

    Java Updated Oct 6, 2015

  • scikit-image Public

    Forked from scikit-image/scikit-image

    Image Processing SciKit (Toolbox for SciPy)

    Python Other Updated May 28, 2015