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Differential analysis of multi-omics data based on the Tweedie distribution
Collection of walkthrough tutorials on how to use Tweedieverse for differential analysis of omics data.
List of software packages for multi-omics analysis
SimpleMetaPipeline, an open-source metabarcoding and meta-analyses bioinformatics pipeline implemented in R.
Database and pipeline for phylogenetic determination of AMF from environmental sequences
Automated Alignment of Untargeted Metabolic Datasets with Optimal Transport
Code, unit tests, and tutorials for running PICRUSt2
TalkToModel gives anyone with the powers of XAI through natural language conversations 💬!
Spatio-temporal joint species distribution modeling using community-level basis functions
This space will be used to maintain the script and functions file associated with the paper "A versatile workflow for linear modelling in R" published in Frontiers of Ecology and Evolution.
PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
Tools and pipelines tailored to using PacBio HiFi Reads for metagenomics
The simplest, fastest repository for training/finetuning medium-sized GPTs.
CAT/BAT/RAT: tools for taxonomic classification of contigs and metagenome-assembled genomes (MAGs) and for taxonomic profiling of metagenomes
In this repository, you will find the references used in my presentation for the DMG symposium “Practical applications of metagenomics towards typing”. The title of my presentation is You must choo…
A community-maintained Python framework for creating mathematical animations.
GraphBio: a shiny web app to easily perform popular visualization analysis for omics data
Code for "Discovering Symbolic Models from Deep Learning with Inductive Biases"
Introduction to Deep Learning workshop
Code and Data in manuscript: A comprehensive evaluation of microbial differential abundance analysis methods: current status and potential solutions
Bayesian Modeling and Probabilistic Programming in Python
High-Performance Symbolic Regression in Python and Julia